View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5689_low_71 (Length: 236)

Name: NF5689_low_71
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5689_low_71
NF5689_low_71
[»] chr8 (15 HSPs)
chr8 (1-221)||(4680330-4680543)
chr8 (1-109)||(4777485-4777593)
chr8 (10-107)||(4688071-4688168)
chr8 (16-179)||(4906008-4906173)
chr8 (1-112)||(4891289-4891400)
chr8 (1-107)||(4725335-4725441)
chr8 (10-107)||(4995367-4995464)
chr8 (10-107)||(10445821-10445918)
chr8 (1-109)||(4735805-4735913)
chr8 (10-48)||(4744870-4744908)
chr8 (10-107)||(4926184-4926281)
chr8 (10-109)||(4713907-4714006)
chr8 (13-47)||(21440515-21440549)
chr8 (10-47)||(4702627-4702664)
chr8 (75-111)||(4702563-4702599)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4680543 - 4680330
Alignment:
Q  1 acaccactgtctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4680543 acaccactgtctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatga 4680444  T
Q  101 atcctgatatatgtaggaacatatatattaagataacttcaactagaataattattatttgtaacaaatatgtgacatatataaagcagctgtatacaaa 200  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  4680443 atcctgatatatgtaggaac----atattaagataacttcaactagaata---attatttgtaacaaatatgtgacatatataaagcagctgtatacaaa 4680351  T
Q  201 ttcatttgacaaacctgattg 221  Q
    |||||||||||||||||||||    
T  4680350 ttcatttgacaaacctgattg 4680330  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 4777485 - 4777593
Alignment:
Q  1 acaccactgtctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatga 100  Q
    ||||| || ||||||||||||||||||||||||||| ||| | |||||  ||| |||||||||||| | | || ||||||||| ||||||||||||||||    
T  4777485 acaccgctatctatgaatttggcatctgaaatgtaatttaggtctgtgtccgtatcagaatagctcaaatgttcaggtagaccacaatctatgctaatga 4777584  T
Q  101 atcctgata 109  Q
    |||||||||    
T  4777585 atcctgata 4777593  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 4688168 - 4688071
Alignment:
Q  10 tctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctga 107  Q
    ||||||||||||||||||||||||||| |||||||||||  ||| ||||||||||| ||   || || |||||| |||||||||||||||||||||||    
T  4688168 tctatgaatttggcatctgaaatgtaatttatgcctgtgtccgtttcagaatagcttgaaagttcagatagaccacaatctatgctaatgaatcctga 4688071  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 4906008 - 4906173
Alignment:
Q  16 aatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctgatatatgta 115  Q
    ||||||||||||||||||||| |||||||| ||||  | |||||||||||| | | || |||||||||||| |||| ||||||||||||||||| || ||    
T  4906008 aatttggcatctgaaatgtaatttatgcctctgcttatatcagaatagctcaaatgttcaggtagaccgcagtctaagctaatgaatcctgatacatata 4906107  T
Q  116 ------ggaacatatatattaagataacttcaactagaataattattatttgtaacaaatatgtgacata 179  Q
          |||||| ||    ||||||||||||| ||| |||||| |||| | |||||||| ||||||||||    
T  4906108 aatttaggaacaaat----taagataacttcagctacaataataattactagtaacaaaaatgtgacata 4906173  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 4891289 - 4891400
Alignment:
Q  1 acaccactgtctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatga 100  Q
    |||||| | |||||||||||||||||||| |||||| ||||||||||  |||    ||||||| || | |||| ||||||||| ||||||| ||||||||    
T  4891289 acaccagtatctatgaatttggcatctgatatgtaatttatgcctgtcttcgatgaagaatagttcaaattttcaggtagaccacaatctaagctaatga 4891388  T
Q  101 atcctgatatat 112  Q
    ||||||||||||    
T  4891389 atcctgatatat 4891400  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 4725441 - 4725335
Alignment:
Q  1 acaccactgtctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatga 100  Q
    |||||| | ||||||||||||||||||||||| ||| ||||||||||| |||| | ||||||| ||   | || |||||| || ||||||||||||||||    
T  4725441 acaccagtatctatgaatttggcatctgaaatataatttatgcctgtggtcgtttgagaataggtcatatgttcaggtaggccacaatctatgctaatga 4725342  T
Q  101 atcctga 107  Q
    |||||||    
T  4725341 atcctga 4725335  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 4995464 - 4995367
Alignment:
Q  10 tctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctga 107  Q
    ||||||||||||||||| ||||||||| |||||  ||||||  | |||||||| || || | || ||||||||| ||||||| |||||||||||||||    
T  4995464 tctatgaatttggcatcagaaatgtaatttatgtgtgtgcttatatcagaataccttgaatctttaggtagaccacaatctaagctaatgaatcctga 4995367  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 10445918 - 10445821
Alignment:
Q  10 tctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctga 107  Q
    ||||||||||||| ||||||||||||| |||||  |||||||   | |  ||||||| | | |||||||||||| |||||||||||||||||||||||    
T  10445918 tctatgaatttggtatctgaaatgtaatttatgtatgtgctctcatgaatatagctcaaatgttgaggtagaccacaatctatgctaatgaatcctga 10445821  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 4735913 - 4735805
Alignment:
Q  1 acaccactgtctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatga 100  Q
    |||||| | ||||||||||||||||||||||| ||| |||||||||||  |  | |||||||| |  | |    ||||||||| ||||||||||||||||    
T  4735913 acaccagtatctatgaatttggcatctgaaatataatttatgcctgtgtccaacgcagaatagtttaaatgcgcaggtagaccacaatctatgctaatga 4735814  T
Q  101 atcctgata 109  Q
    |||||||||    
T  4735813 atcctgata 4735805  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 4744908 - 4744870
Alignment:
Q  10 tctatgaatttggcatctgaaatgtaacttatgcctgtg 48  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  4744908 tctatgaatttggcatctgaaatataacttatgcctgtg 4744870  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 4926184 - 4926281
Alignment:
Q  10 tctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctga 107  Q
    ||||||||||  |||||||| |||||  ||||||||||| || ||||||  ||| | || |||| |||||| || ||||||||||| |||||||||||    
T  4926184 tctatgaattctgcatctgatatgtagtttatgcctgtgatcttctcagtgtagtttgaattttcaggtaggccacaatctatgctgatgaatcctga 4926281  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 4714006 - 4713907
Alignment:
Q  10 tctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgat-ttttgaggtagaccgcaatctatgctaatgaatcctgat 108  Q
    ||||||||||||||||||||||| ||| |||||||||||  |  |  ||||||| | ||| | || |||||| || ||||||||||||||||||||||||    
T  4714006 tctatgaatttggcatctgaaatataatttatgcctgtgtccaacgaagaatag-ttgatatctttaggtaggccacaatctatgctaatgaatcctgat 4713908  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 21440515 - 21440549
Alignment:
Q  13 atgaatttggcatctgaaatgtaacttatgcctgt 47  Q
    |||||||||||||||||||||||| ||||||||||    
T  21440515 atgaatttggcatctgaaatgtaatttatgcctgt 21440549  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 4702664 - 4702627
Alignment:
Q  10 tctatgaatttggcatctgaaatgtaacttatgcctgt 47  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  4702664 tctatgaatttggcctctgaaatgtaatttatgcctgt 4702627  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 4702599 - 4702563
Alignment:
Q  75 aggtagaccgcaatctatgctaatgaatcctgatata 111  Q
    |||||||||||| |||| |||||||||||||||||||    
T  4702599 aggtagaccgcagtctaagctaatgaatcctgatata 4702563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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