View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_73 (Length: 235)
Name: NF5689_low_73
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_73 |
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| [»] scaffold0187 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 37914241 - 37914382
Alignment:
| Q |
75 |
ctaaatatttacaataattagcttcaagagttctccaataacagttattgggcacatagtttaagtaattagaagtggaaaagtgccaataatataaata |
174 |
Q |
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| T |
37914241 |
ctaaatatttacaataattagcttcaagagttctccaataacagttattgtgcacatagtttaagtaattagaagtggaaaagtgccaataatataacta |
37914340 |
T |
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| Q |
175 |
acttgaatcttgagaagagaggaaaagtacaaaagcagaacc |
216 |
Q |
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| T |
37914341 |
acttgaatcttgagaagagaggaaaagtacaaaagcagaacc |
37914382 |
T |
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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 37883369 - 37883436
Alignment:
| Q |
141 |
aattagaagtggaaaagtgccaataatataaataacttgaatcttgagaagagaggaaaagtacaaaa |
208 |
Q |
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| T |
37883369 |
aattagaagtggaaaagtgccaataatataactaacgtgaatcttgagaggagaagaaaagtacaaaa |
37883436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 37914143 - 37914210
Alignment:
| Q |
11 |
atattaagatttggttacttaattcaaacctaaaatgacctgcatatgaggaaaaatatattatctaa |
78 |
Q |
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| T |
37914143 |
atattaagatttggttacttagttcaaacctaaaatgacttgcatctgagaaaaaatatattatctaa |
37914210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 37869735 - 37869778
Alignment:
| Q |
173 |
taacttgaatcttgagaagagaggaaaagtacaaaagcagaacc |
216 |
Q |
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| T |
37869735 |
taacgtgaatcttgagaagagaggaaaagtacaaaagcagaacc |
37869778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 37861530 - 37861601
Alignment:
| Q |
145 |
agaagtggaaaagtgccaataat-ataaataacttgaatcttgagaagagaggaaaagtacaaaagcagaacc |
216 |
Q |
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| T |
37861530 |
agaagtggaaatgtgccaataataataactaacgtaaatcttgagaagagaag-aaagttcaaaagcagaacc |
37861601 |
T |
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Target: scaffold0187 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 4505 - 4438
Alignment:
| Q |
141 |
aattagaagtggaaaagtgccaataatataaataacttgaatcttgagaagagaggaaaagtacaaaa |
208 |
Q |
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| T |
4505 |
aattagaagtgaagaagtcccaataatataactaacatgaatcttgagaagagaagaaaagtacaaaa |
4438 |
T |
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