View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_77 (Length: 220)
Name: NF5689_low_77
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 52193484 - 52193648
Alignment:
| Q |
15 |
caaagggaaacaaggataacaaatgccaaaggaaatgttcacaaaatgtagctacaagcattctaccggcacattgaaacaagtatcgtccacgtcctcg |
114 |
Q |
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| T |
52193484 |
caaagggaaacaaggataacaaatgccgaaggaaatgttcacaaaatgtagctacaagcattctaccggcacattgaaacaagtatcgtccacgtcctcg |
52193583 |
T |
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| Q |
115 |
tcaacctgtaccagtttgctcaaaactttcaccggtgtgcattgagcttcaacatcatcatcatc |
179 |
Q |
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| T |
52193584 |
tcaacctgtaccagtttgctcaaaactttcaccggtgtgcattgagcttcaacatcatcatcatc |
52193648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 52193645 - 52193682
Alignment:
| Q |
167 |
catcatcatcatcttcaaaatcacacatatattgagat |
204 |
Q |
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| T |
52193645 |
catcatcatcatcttcaaaatcacacataaattgagat |
52193682 |
T |
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