View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_80 (Length: 211)
Name: NF5689_low_80
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_80 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 30036510 - 30036319
Alignment:
| Q |
15 |
gagattcatttaatccctctatgttcacagcctgtgaattccaacccatgcttaaaatcttttccaaaatggtatttggaattgtgaccatctgacaaca |
114 |
Q |
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| T |
30036510 |
gagattcatttaatccctctatgttcacagcctgtgaattccaacccatgcttaaaatcttttccaaaatggtatttggaattgtgaccatctgacaaca |
30036411 |
T |
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| Q |
115 |
caa------------attcaatccaaaatcagaagccnnnnnnnnnnnnatgattaagaacaccaattggattcagtttaattcaggttatttct |
197 |
Q |
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| T |
30036410 |
caaattctaagacaaattcaatccaaaatcagaagcc---tttttttttatcattaagaacaccaattggattcagtttaattcaggttatttct |
30036319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 30152246 - 30152055
Alignment:
| Q |
15 |
gagattcatttaatccctctatgttcacagcctgtgaattccaacccatgcttaaaatcttttccaaaatggtatttggaattgtgaccatctgacaaca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30152246 |
gagattcatttaatccctctatgttcacagcctgtgaattccaacccatgcttaaaatcttttccaaaatggtatttggaattgtgaccatctgacaaca |
30152147 |
T |
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| Q |
115 |
caa------------attcaatccaaaatcagaagccnnnnnnnnnnnnatgattaagaacaccaattggattcagtttaattcaggttatttct |
197 |
Q |
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| T |
30152146 |
caaattctaagacaaattcaatccaaaatcagaagcc---tttttttttatcattaagaacaccaattggattcagtttaattcaggttatttct |
30152055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 41282 - 41370
Alignment:
| Q |
34 |
tatgttcacagcctgtgaattccaacccatgcttaaaa-tctttt-ccaaaatggtatttggaattgtgaccatctgacaacacaaatt |
120 |
Q |
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| T |
41282 |
tatgttcacaacatgtgcatcccaactcatgcataaaaatctttttccaaaatggtatttggagttgtaaccatctgacaacacaaatt |
41370 |
T |
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