View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5689_low_81 (Length: 207)

Name: NF5689_low_81
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5689_low_81
NF5689_low_81
[»] chr2 (18 HSPs)
chr2 (18-188)||(9321126-9321296)
chr2 (26-188)||(9328746-9328908)
chr2 (25-150)||(10347979-10348104)
chr2 (23-147)||(9065407-9065532)
chr2 (23-179)||(10336000-10336156)
chr2 (23-148)||(9274705-9274830)
chr2 (22-147)||(16269277-16269402)
chr2 (23-145)||(9060950-9061072)
chr2 (23-147)||(8573314-8573438)
chr2 (23-152)||(9284005-9284134)
chr2 (23-147)||(9316219-9316343)
chr2 (23-150)||(12005933-12006060)
chr2 (23-150)||(12012361-12012488)
chr2 (42-146)||(12018716-12018820)
chr2 (24-147)||(9292122-9292245)
chr2 (44-150)||(7115475-7115581)
chr2 (92-150)||(10353303-10353361)
chr2 (93-146)||(11987372-11987425)
[»] scaffold0667 (1 HSPs)
scaffold0667 (23-148)||(4673-4798)
[»] chr8 (1 HSPs)
chr8 (23-147)||(41966538-41966662)
[»] chr1 (4 HSPs)
chr1 (23-148)||(29467604-29467729)
chr1 (24-148)||(29423458-29423582)
chr1 (26-148)||(29453131-29453253)
chr1 (24-148)||(29443146-29443270)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 9321296 - 9321126
Alignment:
Q  18 caattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321296 caattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacac 9321197  T
Q  118 ttgaaattttcaatgtggttcctcttcctgatgttgataatagtaatgagagttttgaaattgatgttgat 188  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9321196 ttgaaattttcaatgtggttcctcttcctgatgttcataatagtaatgagagttttgaaattgatgttgat 9321126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 9328908 - 9328746
Alignment:
Q  26 gggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaatt 125  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9328908 gggggttttggttgagaattctcttcactggataatgactaagaaacttggtggattacatccttctttaattgttgcgtttaacctaacacttgaaatt 9328809  T
Q  126 ttcaatgtggttcctcttcctgatgttgataatagtaatgagagttttgaaattgatgttgat 188  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9328808 ttcaatgtggttcctcttcctgatgttgataatagtaataagagttttgaaattgatgttgat 9328746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 10348104 - 10347979
Alignment:
Q  25 tgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaat 124  Q
    ||||||||||||||||||||||| |||||||||| ||||| |||||||||| ||| |||||||||||||||||||| || |||||||| |||||||||||    
T  10348104 tgggggtttttgttgagaattctattcactggattatgacgaagaaacttgatgggttacatccttctttaattgtcgcgtttaacctcacacttgaaat 10348005  T
Q  125 tttcaatgtggttcctcttcctgatg 150  Q
    |||||||| |||||||||||||||||    
T  10348004 tttcaatgaggttcctcttcctgatg 10347979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 9065407 - 9065532
Alignment:
Q  23 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 122  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||||| | | | |||||||||||||||||||||||||||||||| |||||||||    
T  9065407 catgggggtttttgttgagaattctattcacttgataatgacgaagaaactagatcggttacatccttctttaattgttgcatttaacctcacacttgaa 9065506  T
Q  123 attttcaa-tgtggttcctcttcctg 147  Q
    |||||||| || |||||| |||||||    
T  9065507 attttcaattgaggttccccttcctg 9065532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 10336156 - 10336000
Alignment:
Q  23 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 122  Q
    |||||| |||||||||||||||||||||||||||||||||||   |||||||| ||| ||||| |||| |||||||| ||| ||||| ||| |||||||     
T  10336156 catgggtgtttttgttgagaattctcttcactggataatgactccgaaacttgatgggttacaaccttgtttaattgctgcgtttaatctatcacttgag 10336057  T
Q  123 attttcaatgtggttcctcttcctgatgttgataa-tagtaatgagagttttgaaatt 179  Q
    |||||||||| |||||||||||||||||   |||| |||||||||||||||| |||||    
T  10336056 attttcaatgaggttcctcttcctgatg-aaataattagtaatgagagttttaaaatt 10336000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 9274830 - 9274705
Alignment:
Q  23 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 122  Q
    ||||||| |||||||||||||||||||||||||| ||||||| | | || ||| ||  | ||| |||| |||||||||||| |||||||||||||||||     
T  9274830 catggggatttttgttgagaattctcttcactgggtaatgactagggaaattgatgagtcacacccttgtttaattgttgcgtttaacctaacacttgat 9274731  T
Q  123 attttcaatgtggttcctcttcctga 148  Q
    ||||||||||||||||||||||||||    
T  9274730 attttcaatgtggttcctcttcctga 9274705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 16269402 - 16269277
Alignment:
Q  22 tcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttga 121  Q
    |||||||||||||||||||||||||| ||| ||| |||||| | ||||||||||  || ||||||||||||||||| || || |||||||||||||||||    
T  16269402 tcatgggggtttttgttgagaattctattcgctgtataatggcgaagaaacttgacgggttacatccttctttaatcgtcgcgtttaacctaacacttga 16269303  T
Q  122 aattttcaatgtggttcctcttcctg 147  Q
     |||||||| | ||||||||||||||    
T  16269302 gattttcaacgaggttcctcttcctg 16269277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 9060950 - 9061072
Alignment:
Q  23 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 122  Q
    |||||||||||||||| ||||||||||||||||| | ||| | |||||||||| ||| | | ||||||  |||||||| ||||||||||| |||||||||    
T  9060950 catgggggtttttgttcagaattctcttcactgggttatggccaagaaacttgatgggtcatatccttggttaattgtcgcatttaacctcacacttgaa 9061049  T
Q  123 attttcaatgtggttcctcttcc 145  Q
    |||||||||| ||||||||||||    
T  9061050 attttcaatgaggttcctcttcc 9061072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 8573314 - 8573438
Alignment:
Q  23 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 122  Q
    |||||||||||||||| ||||||||||||||||| | ||| | |||||||||| ||| | | ||||||  |||||||| ||||||||||| |||||||||    
T  8573314 catgggggtttttgttcagaattctcttcactgggttatggccaagaaacttgatgggtcatatccttggttaattgtcgcatttaacctcacacttgaa 8573413  T
Q  123 attttcaatgtggttcctcttcctg 147  Q
    |||||| | | ||||||||||||||    
T  8573414 attttctacgaggttcctcttcctg 8573438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 9284005 - 9284134
Alignment:
Q  23 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 122  Q
    ||||||||||||||||||||||||| ||||||||||||||  |||||| |||| ||| | | | | || ||||||||| || |||||||||||||| ||     
T  9284005 catgggggtttttgttgagaattctattcactggataatggaaaagaatcttgatgggtcagacctttgtttaattgtcgcgtttaacctaacactagag 9284104  T
Q  123 attttcaatgtggttcctcttcctgatgtt 152  Q
     ||||||| | |||||||||||||| ||||    
T  9284105 gttttcaaagaggttcctcttcctgctgtt 9284134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 9316343 - 9316219
Alignment:
Q  23 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 122  Q
    |||||||||||||||| ||||||||||||||||| |||||||  || ||  ||  |  | ||| |||| ||| ||||| || |||||||||||||||||     
T  9316343 catgggggtttttgttcagaattctcttcactgggtaatgactcagcaaagtgaagagtcacacccttgtttcattgtcgcgtttaacctaacacttgag 9316244  T
Q  123 attttcaatgtggttcctcttcctg 147  Q
    |||||||||||||||||||||||||    
T  9316243 attttcaatgtggttcctcttcctg 9316219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 12005933 - 12006060
Alignment:
Q  23 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 122  Q
    |||||||||||||||||||||||||||||||||||| |||   ||||||| || ||| |||||||    ||||||| | || |||||||||||||||||     
T  12005933 catgggggtttttgttgagaattctcttcactggatgatggtcaagaaacctgatgggttacatcagcgtttaattttcgcgtttaacctaacacttgag 12006032  T
Q  123 attttcaatgtggttcctcttcctgatg 150  Q
     ||||||| | ||||||| |||||||||    
T  12006033 gttttcaacgaggttccttttcctgatg 12006060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 12012361 - 12012488
Alignment:
Q  23 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 122  Q
    |||||| ||||||||||||||||||||||| ||||||| |   ||||| | || ||| ||||||||   ||||||||| || |||||||||||||||||     
T  12012361 catgggagtttttgttgagaattctcttcattggataacggtgaagaatcctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgag 12012460  T
Q  123 attttcaatgtggttcctcttcctgatg 150  Q
     ||||||||| ||||||  |||||||||    
T  12012461 cttttcaatgaggttccatttcctgatg 12012488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 12018716 - 12018820
Alignment:
Q  42 aattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctc 141  Q
    ||||||||||| ||||||||||||| |||| ||| |   || || ||||  |||||||| ||||||||||| ||||| || |||||||||| ||||||||    
T  12018716 aattctcttcattggataatgacaaggaaatttgataactttcaacctttgttaattgtcgcatttaacctcacactcgatattttcaatgaggttcctc 12018815  T
Q  142 ttcct 146  Q
    |||||    
T  12018816 ttcct 12018820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 9292245 - 9292122
Alignment:
Q  24 atgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaa 123  Q
    ||||||||||||||| |||||||| | |||||| |||||||   || | ||| ||  | ||| |||| ||| ||||| || ||||||||||||||||| |    
T  9292245 atgggggtttttgttcagaattctatccactgggtaatgactcggacaattgttgagtcacacccttgtttcattgtcgcttttaacctaacacttgaga 9292146  T
Q  124 ttttcaatgtggttcctcttcctg 147  Q
     |||||||||||||||| ||||||    
T  9292145 ctttcaatgtggttccttttcctg 9292122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 7115475 - 7115581
Alignment:
Q  44 ttctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctctt 143  Q
    |||| |||||||||||||| |   |||||||| ||  | ||| |||| ||||||||| || |||||||||||||||||   ||||| || ||||||||||    
T  7115475 ttctgttcactggataatgtctcggaaacttgatgagtcacacccttgtttaattgtcgcgtttaacctaacacttgagcgtttcattgaggttcctctt 7115574  T
Q  144 cctgatg 150  Q
    |||||||    
T  7115575 cctgatg 7115581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 10353361 - 10353303
Alignment:
Q  92 tttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatg 150  Q
    ||||||| | || ||||||||||||||||| | |||||||| |||||||||||||||||    
T  10353361 tttaattctcgcgtttaacctaacacttgagactttcaatgaggttcctcttcctgatg 10353303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 11987372 - 11987425
Alignment:
Q  93 ttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcct 146  Q
    |||||||| ||||||||||||||||| ||  ||||||||| ||||||| |||||    
T  11987372 ttaattgtcgcatttaacctaacactcgaggttttcaatgaggttccttttcct 11987425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 4798 - 4673
Alignment:
Q  23 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 122  Q
    |||||||||||| |||||| ||||| |||||||||||||| |||||||||||| ||| |||||||||||| ||||||| || ||||||||||||||||||    
T  4798 catgggggttttggttgaggattctattcactggataatggcaaagaaacttgatgggttacatccttctctaattgtcgcttttaacctaacacttgaa 4699  T
Q  123 attttcaatgtggttcctcttcctga 148  Q
    |||||||||| |||||||||||||||    
T  4698 attttcaatgaggttcctcttcctga 4673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 41966538 - 41966662
Alignment:
Q  23 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 122  Q
    |||||||||||||||| | ||||||||||||||||||||||| ||| |||||| ||||||||| |||| ||||||||| || |||||||||||||||||     
T  41966538 catgggggtttttgttcacaattctcttcactggataatgaccaaggaacttgatggattacacccttgtttaattgtcgcgtttaacctaacacttgag 41966637  T
Q  123 attttcaatgtggttcctcttcctg 147  Q
    ||||||||   ||||||||||||||    
T  41966638 attttcaaccaggttcctcttcctg 41966662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 29467604 - 29467729
Alignment:
Q  23 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 122  Q
    ||||| |||||||||||||||||||||||| ||||||||||  |||||||||| ||| |||||  ||| ||||||| | || ||||||||||  |||||     
T  29467604 catggtggtttttgttgagaattctcttcattggataatgaagaagaaacttgatgggttacaatcttgtttaattatcgcgtttaacctaaagcttgag 29467703  T
Q  123 attttcaatgtggttcctcttcctga 148  Q
    |||||||||| |||||||||||||||    
T  29467704 attttcaatgaggttcctcttcctga 29467729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 29423582 - 29423458
Alignment:
Q  24 atgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaa 123  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||| |   ||  | |||  | |||||||||| ||||||||||||| ||| |    
T  29423582 atgggggtttttgttgagaattctcttcactggataatgacggagaaacttgatccgttgaaacctcgtgtaattgttgcgtttaacctaacacatgaga 29423483  T
Q  124 ttttcaatgtggttcctcttcctga 148  Q
    ||||||||| ||||||| |||||||    
T  29423482 ttttcaatgaggttccttttcctga 29423458  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 29453131 - 29453253
Alignment:
Q  26 gggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaatt 125  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||   || ||  ||  | |||||||||| |||||||||||||  || |||    
T  29453131 gggggtttttgttgagaattctcttcactggataatgactcggaaacttggtcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagatt 29453230  T
Q  126 ttcaatgtggttcctcttcctga 148  Q
    ||||||| ||||||| |||||||    
T  29453231 ttcaatgaggttccttttcctga 29453253  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 29443146 - 29443270
Alignment:
Q  24 atgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaa 123  Q
    ||||||| ||||||||||||||| ||||||||| |||||||   |||||||| |   || || |||  |  |||||| || |||||||||||||| || |    
T  29443146 atgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgaga 29443245  T
Q  124 ttttcaatgtggttcctcttcctga 148  Q
    ||||||||| ||||||| |||||||    
T  29443246 ttttcaatgaggttccttttcctga 29443270  T

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