View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_9 (Length: 507)
Name: NF5689_low_9
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 39000099 - 39000608
Alignment:
| Q |
1 |
aatagagaaagagcatgatgatgtacatgtttgtttgggtgccacttttcttttggttgctactctttcattgagtaaatcacaattttggt-------- |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39000099 |
aatagagaaagagcatgatgatgtacatgtttgtttgggtgccacttttcttttggttgctactctttcattgagtaaatcataattttggttacaaaac |
39000198 |
T |
|
| Q |
93 |
gtgtgatactatatcaatatagtctttgaatatatcaaaataactaaaatgttactgaatatatcttttattagtaattttattcatcaaactaacttaa |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39000199 |
gtgtgatactatatcaatatagtctttgaatatatcaaaataactaaaatattactgaatatatcttttgttagtaattttattcatcaaactaacttaa |
39000298 |
T |
|
| Q |
193 |
aagaagatacgtctaataaccaaactaatcgataaaagatatatacgagaaccaaattgaataacaaatgagaaattttgatgtatgtttttgtaatttt |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
39000299 |
aagaagatacgtctaataaccaaactaatcgataaaagacatc--cgagaaccaaattgattaacaaatgagaaatttcaatgtatgtttttgtaatttt |
39000396 |
T |
|
| Q |
293 |
cgtatatttatggactaaatgacaaggactcacaaaaattactatttacacttctttctttggtgttttg-----ctttgcttgataatgcagcttccgt |
387 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
39000397 |
cgtatattcatggactaaatgacaagaactcacaaaaattactatttacacttctttctttcgtgttttgctttgctttgcttgataatgcagcttccgt |
39000496 |
T |
|
| Q |
388 |
atttagtgcataatttcctccactcatagtattggtgttggaggacccacttgccactatcttcattatcactcattccactcaatctttcaatagatac |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39000497 |
atttagtgcataatttcctccactcatagtattggtgttggaggacccacttgccactatcttcattatcactcattccactcaatctttcaatagatac |
39000596 |
T |
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| Q |
488 |
catccctatgct |
499 |
Q |
| |
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|||||||||||| |
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| T |
39000597 |
catccctatgct |
39000608 |
T |
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