View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5690-Insertion-2 (Length: 936)

Name: NF5690-Insertion-2
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5690-Insertion-2
NF5690-Insertion-2
[»] chr1 (13 HSPs)
chr1 (193-369)||(12654052-12654232)
chr1 (609-679)||(49350464-49350537)
chr1 (611-679)||(4001877-4001948)
chr1 (616-679)||(32079336-32079402)
chr1 (616-678)||(6985613-6985676)
chr1 (609-679)||(52921010-52921083)
chr1 (609-679)||(8670798-8670871)
chr1 (609-667)||(49527428-49527489)
chr1 (622-679)||(9599939-9599999)
chr1 (616-654)||(6039645-6039683)
chr1 (607-645)||(27694531-27694569)
chr1 (610-651)||(15424503-15424544)
chr1 (615-679)||(51850792-51850859)
[»] chr7 (4 HSPs)
chr7 (788-936)||(46833339-46833488)
chr7 (8-195)||(46832683-46832889)
chr7 (608-707)||(46833157-46833256)
chr7 (380-464)||(46832931-46833015)
[»] chr4 (4 HSPs)
chr4 (788-902)||(20673983-20674098)
chr4 (370-464)||(20673630-20673724)
chr4 (609-654)||(27453157-27453202)
chr4 (617-667)||(38475065-38475118)
[»] scaffold0049 (2 HSPs)
scaffold0049 (792-875)||(3590-3674)
scaffold0049 (370-464)||(454-549)
[»] chr2 (8 HSPs)
chr2 (609-679)||(16290774-16290847)
chr2 (610-679)||(1648039-1648111)
chr2 (617-679)||(37520622-37520687)
chr2 (609-679)||(8561061-8561134)
chr2 (622-668)||(23766907-23766956)
chr2 (622-668)||(23796100-23796149)
chr2 (617-668)||(11992949-11993003)
chr2 (609-679)||(45329632-45329705)
[»] chr3 (7 HSPs)
chr3 (378-460)||(42277304-42277387)
chr3 (609-679)||(31566252-31566325)
chr3 (609-679)||(51450757-51450830)
chr3 (609-679)||(52136346-52136419)
chr3 (623-679)||(9256290-9256349)
chr3 (616-679)||(7023178-7023244)
chr3 (609-655)||(33123868-33123914)
[»] chr5 (4 HSPs)
chr5 (610-679)||(2078532-2078604)
chr5 (609-679)||(11069356-11069429)
chr5 (608-679)||(32489132-32489206)
chr5 (622-654)||(39668785-39668817)
[»] scaffold0001 (1 HSPs)
scaffold0001 (609-667)||(440127-440188)
[»] chr6 (2 HSPs)
chr6 (609-679)||(20430560-20430633)
chr6 (616-679)||(6079606-6079672)
[»] scaffold0279 (1 HSPs)
scaffold0279 (609-651)||(18445-18487)
[»] chr8 (4 HSPs)
chr8 (622-679)||(16008443-16008503)
chr8 (607-679)||(15218272-15218347)
chr8 (624-679)||(4061840-4061898)
chr8 (612-651)||(3801895-3801934)
[»] scaffold0024 (1 HSPs)
scaffold0024 (609-654)||(48250-48295)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 5e-80; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 193 - 369
Target Start/End: Original strand, 12654052 - 12654232
Alignment:
Q  193 gtgaaaagcatttaacactttccctggagttattcaactggtatacaata----atatagcaaattaacacatcaaacaatatatgaatttcattacaag 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12654052 gtgaaaagcatttaacactttccctggagttattcaactggtatacaatatggcatatagcaaattaacacatcaaacaatatatgaatttcattacaag 12654151  T
Q  289 gcccaagagataagataagaaaccacaatacctatttatgccaagttcaaatgtctggttagcagctttaaacttgttctt 369  Q
    | |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12654152 gtccaagatataagataagaaaccacagtacctatttatgccaagttcaaatgtctggttagcagctttaaacttgttctt 12654232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 609 - 679
Target Start/End: Original strand, 49350464 - 49350537
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||   ||||||||||||||| || |||||||    
T  49350464 tatttggtccatgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctcctttt 49350537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 611 - 679
Target Start/End: Complemental strand, 4001948 - 4001877
Alignment:
Q  611 tttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||| ||||| ||||||||||||||||||||||||||||||||   ||||||||||||||| || |||||||    
T  4001948 tttggtccatgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctcctttt 4001877  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 616 - 679
Target Start/End: Complemental strand, 32079402 - 32079336
Alignment:
Q  616 tccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    ||||| ||||||||||||||||||||||||||||||||   ||||||||||||||| || |||||||    
T  32079402 tccatgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctcctttt 32079336  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 616 - 678
Target Start/End: Original strand, 6985613 - 6985676
Alignment:
Q  616 tccatatcatagagattcgacaaagttttacgttggctg-aggcctaacacaactctttccttt 678  Q
    ||||| |||||||||||||||||||||||||||||||||  ||||||||||||| || ||||||    
T  6985613 tccatgtcatagagattcgacaaagttttacgttggctgtcggcctaacacaaccctctccttt 6985676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 609 - 679
Target Start/End: Complemental strand, 52921083 - 52921010
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggctg---aggcctaacacaactctttcctttt 679  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||   |||||||||||||| || |||||||    
T  52921083 tatttggtccatgtcatagagattcgacaaagttttatgttggctgtcaaggcctaacacaaccctctcctttt 52921010  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 609 - 679
Target Start/End: Original strand, 8670798 - 8670871
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||||| ||||| | ||||||||||||||||||||||| ||||||   ||||||||||||||| || |||||||    
T  8670798 tatttggtccatgttatagagattcgacaaagttttacattggctgtcgaggcctaacacaaccctctcctttt 8670871  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 609 - 667
Target Start/End: Original strand, 49527428 - 49527489
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaa 667  Q
    |||||| ||||| |||||||||||| |||||||||||||||||||   ||||||||||||||    
T  49527428 tatttggtccatgtcatagagattcaacaaagttttacgttggctgtcgaggcctaacacaa 49527489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 622 - 679
Target Start/End: Complemental strand, 9599999 - 9599939
Alignment:
Q  622 tcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||||||||| |||||||||||||||||||||   ||||||||||||||| || |||||||    
T  9599999 tcatagagatccgacaaagttttacgttggctgtcgaggcctaacacaaccctctcctttt 9599939  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 616 - 654
Target Start/End: Complemental strand, 6039683 - 6039645
Alignment:
Q  616 tccatatcatagagattcgacaaagttttacgttggctg 654  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  6039683 tccatgtcatagagattcaacaaagttttacgttggctg 6039645  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 607 - 645
Target Start/End: Original strand, 27694531 - 27694569
Alignment:
Q  607 catatttgatccatatcatagagattcgacaaagtttta 645  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  27694531 catatttgatccatgtcataaagattcgacaaagtttta 27694569  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 651
Target Start/End: Original strand, 15424503 - 15424544
Alignment:
Q  610 atttgatccatatcatagagattcgacaaagttttacgttgg 651  Q
    ||||||||||| | ||||||||| ||||||||||||||||||    
T  15424503 atttgatccatgttatagagatttgacaaagttttacgttgg 15424544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 679
Target Start/End: Complemental strand, 51850859 - 51850792
Alignment:
Q  615 atccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||||| ||||||||||||||| |||||||| ||||| |   ||||||||||||||| || |||||||    
T  51850859 atccatgtcatagagattcgacgaagttttatgttggatgtcgaggcctaacacaaccctctcctttt 51850792  T

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Target: chr7 (Bit Score: 126; Significance: 2e-64; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 788 - 936
Target Start/End: Original strand, 46833339 - 46833488
Alignment:
Q  788 cattatcatcttcatctctttctcttcacatgttcatcatctttccaaacataaactcaaacc-taacaaccaaactaaattcccccaacaaatcaaata 886  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  46833339 cattatcatcttcatctctttctcttctcatgttcatcatctttccaaacataaactcaaaccctaacaaccaaactatattcccccaacaaatcaaata 46833438  T
Q  887 tccaattaccaacaagaaccattctgacaacaacaaatatacccaacaac 936  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  46833439 tccaattatcaacaagaacaattctgacaacaacaaatatacccaacaac 46833488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 46832683 - 46832889
Alignment:
Q  8 acgtgaaggtagaagtggaacatcaaaatgaaacagaggttgcacttgca------cctggagaagggtgttatgctgcagttaatagacaagtaccatc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||| ||||||||||||||||||||||||||    
T  46832683 acgtgaaggtagaagtggaacatcaaaatgaaacagaggttgcacttgcacctgcacctggagaagggtgttacgctgcagttaatagacaagtaccatc 46832782  T
Q  102 ctctcctgaccccttgcataataggtaggtttaag-------------ataaatattgaat-aaaaaataaagggttaataagcttttactcccctatta 187  Q
    |||||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||| ||||| |||||| |||    
T  46832783 ctctcctgaccccttgcataataggtaggtttaagatacagtatgtacataaatattgaataaaaaaataaagggttaataagttttta-tcccctgtta 46832881  T
Q  188 tttgggtg 195  Q
    ||||||||    
T  46832882 tttgggtg 46832889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 608 - 707
Target Start/End: Original strand, 46833157 - 46833256
Alignment:
Q  608 atatttgatccatatcatagagattcgacaaagttttacgttggctgaggcctaacacaactctttccttttttaaatttatattatggaataaaatttt 707  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| ||||||||    
T  46833157 atatttggtccatgtcatagagattcgacaaagttttacgttggttgaggcctaacacaaccctctccttttttaaatttatattatggaacaaaatttt 46833256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 380 - 464
Target Start/End: Original strand, 46832931 - 46833015
Alignment:
Q  380 ccccttataatttaaagatgaattggtttacatcctcaagatagctgattgtgcaaagtgtatgatgtggcacgttgatgtgtta 464  Q
    |||||||||||||||| || |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||    
T  46832931 ccccttataatttaaaaattaattggtttacaccctcaaggtagctgactgtgcaaagtgtatgatgtggcacgctgatgtgtta 46833015  T

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Target: chr4 (Bit Score: 88; Significance: 8e-42; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 788 - 902
Target Start/End: Original strand, 20673983 - 20674098
Alignment:
Q  788 cattatcatcttcatctctttctcttcacatgttcatcatctttccaaacataaactcaaa-cctaacaaccaaactaaattcccccaacaaatcaaata 886  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||||||    
T  20673983 cattatcatcttcatctctttctcttctcatgttcatcatctttccaaacataaactcaaaccctaacaaccaaactttattaccccaacaaatcaaata 20674082  T
Q  887 tccaattaccaacaag 902  Q
    |||||||| |||||||    
T  20674083 tccaattatcaacaag 20674098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 370 - 464
Target Start/End: Original strand, 20673630 - 20673724
Alignment:
Q  370 ttggagattcccccttataatttaaagatgaattggtttacatcctcaagatagctgattgtgcaaagtgtatgatgtggcacgttgatgtgtta 464  Q
    |||||||||||||| | ||||||||||||   ||| |||||| ||||||| ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  20673630 ttggagattcccccctgtaatttaaagattctttgctttacaccctcaaggtagctgactgttcaaagtgtatgatgtggcacgctgatgtgtta 20673724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 654
Target Start/End: Original strand, 27453157 - 27453202
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggctg 654  Q
    |||||| ||||| ||||||||||||| |||||||||||||||||||    
T  27453157 tatttggtccatgtcatagagattcggcaaagttttacgttggctg 27453202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 667
Target Start/End: Original strand, 38475065 - 38475118
Alignment:
Q  617 ccatatcatagagattcgacaaagttttacgttggc---tgaggcctaacacaa 667  Q
    |||| ||||||||||||||||| |||||||||||||   |||||||||||||||    
T  38475065 ccatgtcatagagattcgacaacgttttacgttggctattgaggcctaacacaa 38475118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 792 - 875
Target Start/End: Complemental strand, 3674 - 3590
Alignment:
Q  792 atcatcttcatctctttctcttcacatgttcatcatctttccaaacataaactcaaa-cctaacaaccaaactaaattcccccaa 875  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||    
T  3674 atcatcttcatctctttctcctctcatgttcatcatctttccaaacataaactcaaatcctaacaaccaaactttattcccccaa 3590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 370 - 464
Target Start/End: Original strand, 454 - 549
Alignment:
Q  370 ttggagattcccccttataatttaaagatgaattggtttacatcc-tcaagatagctgattgtgcaaagtgtatgatgtggcacgttgatgtgtta 464  Q
    ||||||||||||||||  |||| ||||||   |||||||| | || ||| ||||||||| |||||||| |||||||||||||||||||||||||||    
T  454 ttggagattcccccttcaaattaaaagattctttggtttatacccctcacgatagctgactgtgcaaaatgtatgatgtggcacgttgatgtgtta 549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 609 - 679
Target Start/End: Complemental strand, 16290847 - 16290774
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||    
T  16290847 tatttggtccatgtcatagagattcgacaaagttttacgttggctatcgaggcctaacacaaccctttcctttt 16290774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 610 - 679
Target Start/End: Complemental strand, 1648111 - 1648039
Alignment:
Q  610 atttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||   ||||||||||||||| || |||||||    
T  1648111 atttggtccatgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctcctttt 1648039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 617 - 679
Target Start/End: Complemental strand, 37520687 - 37520622
Alignment:
Q  617 ccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||| ||||||||||||||||||||||||||||||||   ||||||||||||||| || |||||||    
T  37520687 ccatgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctcctttt 37520622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 609 - 679
Target Start/End: Original strand, 8561061 - 8561134
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||||| ||||| |||||| ||||| |||||||||||||||||||   ||||||||||||||| || |||||||    
T  8561061 tatttggtccatgtcatagggattcaacaaagttttacgttggctgtcgaggcctaacacaaccctctcctttt 8561134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 622 - 668
Target Start/End: Original strand, 23766907 - 23766956
Alignment:
Q  622 tcatagagattcgacaaagttttacgttggct---gaggcctaacacaac 668  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||    
T  23766907 tcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaac 23766956  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 622 - 668
Target Start/End: Original strand, 23796100 - 23796149
Alignment:
Q  622 tcatagagattcgacaaagttttacgttggct---gaggcctaacacaac 668  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||    
T  23796100 tcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaac 23796149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 617 - 668
Target Start/End: Complemental strand, 11993003 - 11992949
Alignment:
Q  617 ccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaac 668  Q
    |||| |||||||||||||||||||||||| |||||||   |||||||||||||||    
T  11993003 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaac 11992949  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 609 - 679
Target Start/End: Original strand, 45329632 - 45329705
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||||||||  | |||||||||||||| |||||||||||||||||   ||| ||||||||||| || |||||||    
T  45329632 tatttgatctttgtcatagagattcgataaagttttacgttggctgtcgagacctaacacaaccctctcctttt 45329705  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 378 - 460
Target Start/End: Original strand, 42277304 - 42277387
Alignment:
Q  378 tcccccttataatttaaagatgaattggtttacatcc-tcaagatagctgattgtgcaaagtgtatgatgtggcacgttgatgt 460  Q
    |||||||| ||||||||||||   |||||||||| || ||||| ||||||| |||||| |||||||||||||||||| ||||||    
T  42277304 tcccccttgtaatttaaagattctttggtttacacccctcaaggtagctgactgtgcatagtgtatgatgtggcacgctgatgt 42277387  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 609 - 679
Target Start/End: Original strand, 31566252 - 31566325
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||||| ||||| |||||||||||| |||||||| ||||||||||   ||||||||||||||| || |||||||    
T  31566252 tatttggtccatgtcatagagattctacaaagttctacgttggctgtcgaggcctaacacaaccctctcctttt 31566325  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 609 - 679
Target Start/End: Original strand, 51450757 - 51450830
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||||| |||||  |||||| ||||||||||||||||||||||||   ||||||||||||||| || |||||||    
T  51450757 tatttggtccatgccatagatattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctcctttt 51450830  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 609 - 679
Target Start/End: Complemental strand, 52136419 - 52136346
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||||| || || ||||||||||||||||||||||||||||||||    |||||||||||||| || |||||||    
T  52136419 tatttggtctatgtcatagagattcgacaaagttttacgttggctatcaaggcctaacacaaccctctcctttt 52136346  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 623 - 679
Target Start/End: Complemental strand, 9256349 - 9256290
Alignment:
Q  623 catagagattcgacaaagttttacgttggc---tgaggcctaacacaactctttcctttt 679  Q
    ||||||||||||||||| ||||||||||||   |||||||||||||||| || |||||||    
T  9256349 catagagattcgacaaaattttacgttggctgttgaggcctaacacaaccctctcctttt 9256290  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 679
Target Start/End: Complemental strand, 7023244 - 7023178
Alignment:
Q  616 tccatatcatagagattcgacaaagttttacgttggc---tgaggcctaacacaactctttcctttt 679  Q
    ||||| ||||||||||| || ||||||||||||||||   |||||||||||||||| || |||||||    
T  7023244 tccatgtcatagagatttgataaagttttacgttggctgttgaggcctaacacaaccctctcctttt 7023178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 609 - 655
Target Start/End: Original strand, 33123868 - 33123914
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggctga 655  Q
    |||||| || || |||||| |||||||||||||||||||||||||||    
T  33123868 tatttggtcgatgtcatagggattcgacaaagttttacgttggctga 33123914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 679
Target Start/End: Original strand, 2078532 - 2078604
Alignment:
Q  610 atttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    ||||| ||||| ||||||||||||||||||||||||| ||||||   ||||||||||||||| || |||||||    
T  2078532 atttggtccatgtcatagagattcgacaaagttttactttggctgtcgaggcctaacacaaccctctcctttt 2078604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 609 - 679
Target Start/End: Original strand, 11069356 - 11069429
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttg---gctgaggcctaacacaactctttcctttt 679  Q
    |||||| ||||| ||||||||||||||||||||||| |||||   | |||||||||||||||| || |||||||    
T  11069356 tatttggtccatgtcatagagattcgacaaagttttgcgttggttgttgaggcctaacacaacgctctcctttt 11069429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 608 - 679
Target Start/End: Complemental strand, 32489206 - 32489132
Alignment:
Q  608 atatttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    ||||||| ||||| |||||| |||||||||||||||||||||| ||   |||| |||||||||| || |||||||    
T  32489206 atatttggtccatgtcatagggattcgacaaagttttacgttgactgtcgaggtctaacacaaccctctcctttt 32489132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 622 - 654
Target Start/End: Original strand, 39668785 - 39668817
Alignment:
Q  622 tcatagagattcgacaaagttttacgttggctg 654  Q
    |||||||||||||||||||||||||||||||||    
T  39668785 tcatagagattcgacaaagttttacgttggctg 39668817  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 609 - 667
Target Start/End: Complemental strand, 440188 - 440127
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaa 667  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||||   ||||||||||||||    
T  440188 tatttggtccatgtcatagagatttgacaaagttttacgttggctgtcgaggcctaacacaa 440127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 609 - 679
Target Start/End: Original strand, 20430560 - 20430633
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||||| | ||| |||||||||||| |||||||||||||||||||   ||||||||||||||| || |||||||    
T  20430560 tatttggttcatgtcatagagattcaacaaagttttacgttggctgtcgaggcctaacacaaccctctcctttt 20430633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 679
Target Start/End: Complemental strand, 6079672 - 6079606
Alignment:
Q  616 tccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    ||||| ||||||||||||||||||||||||||||| ||   |||||||||| |||| || |||||||    
T  6079672 tccatgtcatagagattcgacaaagttttacgttgactgtcgaggcctaacgcaaccctctcctttt 6079606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 609 - 651
Target Start/End: Complemental strand, 18487 - 18445
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttgg 651  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  18487 tatttggtccatgtcatagagattcgacaaagttttacgttgg 18445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 622 - 679
Target Start/End: Original strand, 16008443 - 16008503
Alignment:
Q  622 tcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||||||||||| |||||||||||||||||||   ||||||||||||||| || |||||||    
T  16008443 tcatagagattcaacaaagttttacgttggctgtcgaggcctaacacaaccctctcctttt 16008503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 607 - 679
Target Start/End: Original strand, 15218272 - 15218347
Alignment:
Q  607 catatttgatccatatcatagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    |||||||| ||||| |||||||||||||||||| |||||||||| ||   ||||| ||||||||| || |||||||    
T  15218272 catatttggtccatgtcatagagattcgacaaaattttacgttgactatcgaggcttaacacaaccctctcctttt 15218347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 624 - 679
Target Start/End: Complemental strand, 4061898 - 4061840
Alignment:
Q  624 atagagattcgacaaagttttacgttggct---gaggcctaacacaactctttcctttt 679  Q
    ||||||||| ||||||||||||||||||||   ||||||||||||||| || |||||||    
T  4061898 atagagatttgacaaagttttacgttggctgtcgaggcctaacacaaccctctcctttt 4061840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 651
Target Start/End: Complemental strand, 3801934 - 3801895
Alignment:
Q  612 ttgatccatatcatagagattcgacaaagttttacgttgg 651  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  3801934 ttgattcatatcatagagattcaacaaagttttacgttgg 3801895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 654
Target Start/End: Original strand, 48250 - 48295
Alignment:
Q  609 tatttgatccatatcatagagattcgacaaagttttacgttggctg 654  Q
    |||||||||||| |||||||||||||| |||||| || ||||||||    
T  48250 tatttgatccatgtcatagagattcgataaagttatatgttggctg 48295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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