View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5690-Insertion-6 (Length: 241)
Name: NF5690-Insertion-6
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5690-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 39461978 - 39461820
Alignment:
| Q |
7 |
aaaacagaaggaagaaactcatattgtctcaaaagctcattctaatccctttgctgatctagcatccaacctacactcccccactaaattttcatgttct |
106 |
Q |
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| T |
39461978 |
aaaacagaaggaagaaactcatattgtctcaaaagctcattctaatccctttgctgatctagcatccaacctacactcccccactaaaatttcatgttct |
39461879 |
T |
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| Q |
107 |
aatgttcctatgaatgctaggaagccattatccaattttggttcaaattcaatttctaa |
165 |
Q |
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| T |
39461878 |
aatgttcctatgaatgctaggaagccattatccaattttggttcaaattcaatttctaa |
39461820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 39461485 - 39461408
Alignment:
| Q |
164 |
aatctttttcattccttcaacatgttagagcactcaccatttaaaataaaaaagtttcggattttgggttccatgtaa |
241 |
Q |
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| T |
39461485 |
aatctttttcattccttcaacatgttagagcactcaccatttcaaataaaaaagtttcggattttgggttccatgtaa |
39461408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 163
Target Start/End: Original strand, 39700396 - 39700531
Alignment:
| Q |
28 |
tattgtctcaaaagctcattctaatccctttgctgatctagcatccaacctacactcccccactaaattttcatgttctaatgttcctatgaatgctagg |
127 |
Q |
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||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||||| | |||||||||||||| || |
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| T |
39700396 |
tattggctcaaaggatcattttaatccctttgctgatctagcatccaacctacactaccccactacaaggccatgttctgaggttcctatgaatgccaga |
39700495 |
T |
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| Q |
128 |
aagccattatccaattttggttcaaattcaatttct |
163 |
Q |
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| T |
39700496 |
aaaccgctatccaattttggttcaaattcaacttct |
39700531 |
T |
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