View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5690_high_10 (Length: 376)
Name: NF5690_high_10
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5690_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 54 - 360
Target Start/End: Original strand, 23124522 - 23124825
Alignment:
| Q |
54 |
ctcagacatgataaaataacattctaagcctatttttgatgaattcatattaaagagaagtaagaaataaccatgtgattgatggaatatggcacatatc |
153 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |||| |||| |
|
|
| T |
23124522 |
ctcacacatgataaaataacattctaaacctatttttgatgaattcatattaaagagcggtaagaaataagcacgtgattgatggaataatgcacgtatc |
23124621 |
T |
|
| Q |
154 |
aaattggttgaattggaaatcaataataacaaccacgacaatgaatgaatttaaaagaaacaaattggaactgaagatcgaactcttgcagtgcatcgtg |
253 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | |
|
|
| T |
23124622 |
aaatttgttgaatcggaaatcaataataacaaccacgacaatgaatgaatttaaaagaaacaaattggaattgaagatggaactcttgcagtgcatc--g |
23124719 |
T |
|
| Q |
254 |
tggttctaaaatttatgatataataatacgatagcaagagatacataatacatagtgtttgggttcttttttatagactaattttataaatgaaaactcc |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
23124720 |
tggttctaaaatttatgatataataatacgatagcaagagatacataatacatagtgtttgggttc-tttttatagactaattttacaaatgaaaactcc |
23124818 |
T |
|
| Q |
354 |
taaaatc |
360 |
Q |
| |
|
||||||| |
|
|
| T |
23124819 |
taaaatc |
23124825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 23120852 - 23120894
Alignment:
| Q |
15 |
ggtgtgacaatcctcacatttcatactcaaagtaaactactca |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23120852 |
ggtgtgacaatcctcacatttcatactcaaagtaaattactca |
23120894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 26306568 - 26306620
Alignment:
| Q |
307 |
agtgtttgggttcttttttatagactaattttataaatgaaaactcctaaaatc |
360 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
26306568 |
agtgtttgggttcttttt-ataaactaattttataactaaaaactcctaaaatc |
26306620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 25413136 - 25413176
Alignment:
| Q |
67 |
aaataacattctaagcctatttttgatgaattcatattaaa |
107 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
25413136 |
aaataatattctaaacctatttttgatgaattcatattaaa |
25413176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 28360852 - 28360790
Alignment:
| Q |
39 |
actcaaagtaaactactcagacatgataaaataacattctaagcctatttttgatgaattcat |
101 |
Q |
| |
|
|||||||||| ||||||||||||| || |||||| | ||||| |||| |||||||||||||| |
|
|
| T |
28360852 |
actcaaagtagactactcagacataattaaataataatctaaacctagctttgatgaattcat |
28360790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 21178588 - 21178650
Alignment:
| Q |
39 |
actcaaagtaaactactcagacatgataaaataacattctaagcctatttttgatgaattcat |
101 |
Q |
| |
|
|||||||||| ||||||||||||| || |||||| | ||||| |||| ||||||||||||||| |
|
|
| T |
21178588 |
actcaaagtagactactcagacataattaaataataatctaaacctagttttgatgaattcat |
21178650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University