View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5690_high_18 (Length: 251)
Name: NF5690_high_18
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5690_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 53676863 - 53677108
Alignment:
| Q |
1 |
ttcttaaccaactttcaattcttagcagcatttcaacaaacacattccttagtagaatcacaaatgagtaatgagtaacattaaattaaattgtgttaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53676863 |
ttcttaaccaactttcaattcttagcagcatttcaacaaacacattccttagtagaatcacaaatgagtaatgagtaacattaaattaaattgtgttcaa |
53676962 |
T |
|
| Q |
101 |
gacataca----gagtatagattcaacaaattgtctaaactctaaaatgaaattgaaatattcatcctaatcctgattcctattctttaatttcaatatc |
196 |
Q |
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| T |
53676963 |
gacatacatacagaatatagattcaacaaattgtctaaactctaaaatgaaattgaaatattcatcctaatcctgattcctattctttaatttcaatatc |
53677062 |
T |
|
| Q |
197 |
tactttcccttaatttaaattcaattattttctttcctagaataat |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
53677063 |
tactttcccttaatttaaattcaattattttctttcctagcataat |
53677108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 34139200 - 34139310
Alignment:
| Q |
42 |
acattccttagtagaatcacaaatgagtaatgagtaacattaaattaaattgtgttaaagacatacagagtatagattcaacaaattgtctaaactct-a |
140 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| | |
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| T |
34139200 |
acattccttataagaatcacaaatgagtaatgagt-----taaattaaattgtgttaaagacatacaaaatatagattcaacaagttgtctaaactctaa |
34139294 |
T |
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| Q |
141 |
aaatgaaattgaaata |
156 |
Q |
| |
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|||| ||||||||||| |
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| T |
34139295 |
aaataaaattgaaata |
34139310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34131235 - 34131280
Alignment:
| Q |
1 |
ttcttaaccaactttcaattcttagcagcatttcaacaaacacatt |
46 |
Q |
| |
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|||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
34131235 |
ttcttaaccaactttcaactcttagcagcattacaacaaacacatt |
34131280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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