View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5690_high_4 (Length: 484)
Name: NF5690_high_4
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5690_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Original strand, 10724064 - 10724526
Alignment:
| Q |
14 |
ctgcagggaatcctacatatataccaacaaaatagttgtattactttcattttgtgccttctgtagtatagtaattcttctattgccttgacaagggatt |
113 |
Q |
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| T |
10724064 |
ctgcagggaatcctacatatataccaacaaaatagttgtattactttcattttgtgccttctgtagtatagtaattcttctattgccttgacaagggatt |
10724163 |
T |
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| Q |
114 |
gagaaagattatctacatttgggaaaatgttcaaactttcaaatgaaataagcacaatttggtcctttttcttgtacaatttgccaccatcagttttatc |
213 |
Q |
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| T |
10724164 |
gagaaagattatctacatttgggaaaatgttcaaactttcaaatgaaataagcacaatttggtcctttttcttgtacaatttgccaccatcagttttatc |
10724263 |
T |
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| Q |
214 |
aactaatgaagt------tgcaaataatgaagttgcaaaatcggcaaaaccaacattatcggggt--tatcattcactcaaaccttgtgatgatacagtc |
305 |
Q |
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| T |
10724264 |
aactaaagatggaaaggatgcaaataatgaagttgcaaaatcggcaaaaccaacattatcggggtgttatcattcactcaaaccttgtgatgatacagtc |
10724363 |
T |
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| Q |
306 |
attaaaaacatcaataaaatgcacgccgctccatttcacaactcgatcaaagtaaatgaaaaaatgatttgaattagtattttatgagcattggtatttg |
405 |
Q |
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| T |
10724364 |
attaaaaacatcaataaaatgcacgccgctccatttcacaactcgatcaaagtaaatgaaaaaatgatttgaattagtattttatgagcattggtatttg |
10724463 |
T |
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| Q |
406 |
cagctaatcgccagtttttctgtattcaggcttcagctcataggtgccttgattagttccttt |
468 |
Q |
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| T |
10724464 |
cagctaatcgccagtttttctgtattcaggcttcagctcataggtgccttgattagttccttt |
10724526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 11418163 - 11418226
Alignment:
| Q |
112 |
ttgagaaagattatctacatttgggaaaatgttcaaactttcaaat-gaaataagcacaatttg |
174 |
Q |
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| T |
11418163 |
ttgacaaagattatttacatttagaaaaatgttcaaactttcaaatagaaataagcacaatttg |
11418226 |
T |
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