View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5690_high_7 (Length: 431)
Name: NF5690_high_7
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5690_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 41072162 - 41071867
Alignment:
| Q |
1 |
ctcttggttggcatcaggttgtgttggaaggtgtgcaatagaaagtttgtgttact-tgaatctcttcatgtggtgtacttggtgacgaaggacactctg |
99 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41072162 |
ctcttgcttggcatcaggttgtgttggaagatgtgctatagaaagtttgtgttactctgaatcttttcatgtggtgtacttggtgacgaaggacactctg |
41072063 |
T |
|
| Q |
100 |
caatttcatccttatgcaagtcttttggaactcatccaaaactatattgctaaagatttgactatttatgttcatcatatcattttgatgggtaattcgt |
199 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
41072062 |
caatttcatccttatgcaagtcttttgaaactcatccaaaactatattgctaaagatttgactatttatgttcatcatatcattttggtgggtaatttgt |
41071963 |
T |
|
| Q |
200 |
gttcgtcattcttactaaactgagatctaatagttcagatcatcttgtctctttcaatgaacaccaccatgtttatcatattctctattaggtgat |
295 |
Q |
| |
|
|||||||||||||||| | |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41071962 |
gttcgtcattcttactgagctgatatctaataattcagatcatcttgtctctttcaataaacaccaccatgtttatcatattctctattaggtgat |
41071867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 41071807 - 41071745
Alignment:
| Q |
356 |
aatgtatccaaaataattaattagtccctaatatataaaaagtcattcaatttagtggatatt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41071807 |
aatgtatccaaaataattaattagtccctaatatataaaaagtcattcaatttagtggatatt |
41071745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 1871764 - 1871710
Alignment:
| Q |
103 |
tttcatccttatgcaagtcttttggaactcatccaaaactatattgctaaagatt |
157 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
1871764 |
tttcatctttatgcaaatcttttggaactcatccaaaattatcttgctaaggatt |
1871710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 1862586 - 1862532
Alignment:
| Q |
103 |
tttcatccttatgcaagtcttttggaactcatccaaaactatattgctaaagatt |
157 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
1862586 |
tttcatcattatgcaaatctcttggaactcatccaaaattatcttgctaaggatt |
1862532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University