View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5690_low_1 (Length: 720)
Name: NF5690_low_1
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5690_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 298 - 706
Target Start/End: Complemental strand, 47861901 - 47861485
Alignment:
| Q |
298 |
tgcaaggttttactccaaataccgatttctccgaacttcactctaccatgcgagccatcgagttagctagcaactccattcaggtttcttcgtattcctc |
397 |
Q |
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| T |
47861901 |
tgcaaggttttactccaaataccgatttctccgaacttcactctaccatgcgagccatcgagttagctagcaactccattcaggtttcttcgtattcctc |
47861802 |
T |
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| Q |
398 |
tccgttcttaataatactatactgtaatcgcaataattgcaatgctcaatataatcatgttattttcagatgcaaatcagtccagcagcttccgaagcta |
497 |
Q |
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| T |
47861801 |
tccgttcttaataatactatactgtaatcgcaataatcgcaatgctcaatataatcatgttattttcagatgcaaatcagtccagcagcttccgaagcta |
47861702 |
T |
|
| Q |
498 |
ttatattgtcattaggccaatcttctcaaccatataagacttgtcagttcattcttggttggtcacacactttcattatgtttaaatac------tttac |
591 |
Q |
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| T |
47861701 |
ttatattgtcattaggccaatcttctcaaccatataagacttgtcagttcattcttggttggtcacacactttcattatgtttaaatgctatacttttac |
47861602 |
T |
|
| Q |
592 |
tcaactttcatataccaccatgccgggatctattgctcttg--tttttatcaatttcttttgatctagtagttctttttaatttccaattacatgctaga |
689 |
Q |
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| T |
47861601 |
tcaactttcatataccaccatgccgggttctattgctcttgtttttttatcaatttcttttgatctaggagttctttttaatttccaattacatgctaga |
47861502 |
T |
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| Q |
690 |
atcttgttgtataggtg |
706 |
Q |
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| T |
47861501 |
atcttgttgtataggtg |
47861485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 47862185 - 47861919
Alignment:
| Q |
12 |
aaaggaggagagtatagaagtagtgagcgagcactcactgaacagtcagtaaaacccctcagccagagagagag--------gggcacactgaactcaac |
103 |
Q |
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| T |
47862185 |
aaaggaggagagtatagaagtagtgagcgagcact----gaacagtcagtaaaacccctcagccagagagagagagagagaggggcacactgaactcaac |
47862090 |
T |
|
| Q |
104 |
tgaactcaacaaccaaaacgacgaacgacgacgttttcactctcctctctgattctacaaatcaaacaaacgacgttcgttcgcgatttgatttgatttg |
203 |
Q |
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| T |
47862089 |
tgaactcaacaatcaaaacgacgaacgacgacgttttcactctcctctctgattctacaaatcaaacaaacgacgttcgttcgcgatttgatttgatttg |
47861990 |
T |
|
| Q |
204 |
attccgaatttctgcatcatcacatcattccaagttgaatctcgattaattaattaggttttagcattcac |
274 |
Q |
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| T |
47861989 |
attccgaatttctgcatcatcacatcattccaagttgaatctcgattaattaattaggttttagcattcac |
47861919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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