View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5690_low_12 (Length: 353)
Name: NF5690_low_12
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5690_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 33485961 - 33486272
Alignment:
| Q |
1 |
tttttcattgcaattttttaggtcctctaattttgagattgtgtgtcaaagactttgttgcaattacaccgggtcggccctatcatttaggctctaccat |
100 |
Q |
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| T |
33485961 |
tttttcattgcaattttttaggtcctctaattttgagattgtgtgtcaaagactttgttgcaattacaccgggtcggccctatcatttaggctctaccat |
33486060 |
T |
|
| Q |
101 |
ttgaactatggtaggaatctccatggtagtaaccgggttcttgaatttaaggctcttagttacaaattatttaattaagacttttaggacttgattataa |
200 |
Q |
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| T |
33486061 |
ttgaactatggtaggaatctccatggtagtaaccgggttcttgaatttaaggctcttagttacaaattatttaattaagacttttaggacttgattataa |
33486160 |
T |
|
| Q |
201 |
ataactcaaagatatgctaccgaactaaaatttaaggactcaattacatattatattaaagtcaaatgacctataacaattgttttagttcaaatactta |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33486161 |
ataactcaaagatatgttaccgaactaaaatttaaggactcaattacatattatattaaagtcaaatgacttataacaattgttttagttcaaatactta |
33486260 |
T |
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| Q |
301 |
tttataaagtgt |
312 |
Q |
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|||||||||||| |
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| T |
33486261 |
tttataaagtgt |
33486272 |
T |
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