View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5690_low_15 (Length: 315)

Name: NF5690_low_15
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5690_low_15
NF5690_low_15
[»] chr2 (1 HSPs)
chr2 (1-297)||(1055648-1055944)


Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 1055648 - 1055944
Alignment:
Q  1 atattgaagcggaacggagtagaagagttgtaactactcctggttttagtttctctgctgctggtcttctctttccttatcatcttggtgtcgctcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1055648 atattgaagcggaacggagtagaagagttgtaactactcctggttttagtttctctgctgctggtcttctctttccttatcatcttggtgtcgctcattt 1055747  T
Q  101 tcttattcagaatggttacattaaggtctatcctccnnnnnnnaattcataactattaaggacttgtttggattggatttatttatgtaagcttatgctt 200  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1055748 tcttattcagaatggttacattaaggtctatcctcctttttttaattcataactattaaggacttgtttggattggatttatttatgtaagcttatgctt 1055847  T
Q  201 atcaagggtctgtgtgaattgactcatttaaccttctctacttgcgttagtgtcgaacagacaccggtagtaatttaagcttatgctcatctagagt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1055848 atcaagggtctgtgtgaattgactcatttaaccttctctacttgcgttagtgtcgtacagacaccggtagtaatttaagcttatgctcatctagagt 1055944  T

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