View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5690_low_16 (Length: 264)
Name: NF5690_low_16
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5690_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 36690330 - 36690117
Alignment:
| Q |
26 |
gaacacatcaactacctagaggtttcctcaaataatctaaacgccccctatgttatcccataagccatatttttatgtcttattaatttaaaatcctcaa |
125 |
Q |
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| T |
36690330 |
gaacacatcaactacctagaggtttcctcaaataatctaaacgccccctatgttatcccataagccatttttttatgtcttattaatttaaaatccttaa |
36690231 |
T |
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| Q |
126 |
aatgaataacnnnnnnnntatatttttaatgacttaaaaagtagttactattttgagaaagcaactgaaaca-ttattaagctaatatgtgacacattat |
224 |
Q |
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| T |
36690230 |
aatgaataacaaaaaaaatatatttttaatgact--------------tattttgagaaagcaactgaaacatttattaagctaatatgtgacacattat |
36690145 |
T |
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| Q |
225 |
acacgtcttccacttcatacaaacatgt |
252 |
Q |
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| T |
36690144 |
acacgtcttccacttcatacaaacatgt |
36690117 |
T |
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