View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5690_low_2 (Length: 605)
Name: NF5690_low_2
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5690_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 16 - 587
Target Start/End: Complemental strand, 45371188 - 45370617
Alignment:
| Q |
16 |
atagtcgcaaaagggaattgtgtcagaagaataaccatatctcacctttaccaacaaacacactattttcccttacaaccaaaaagagacacaatatttt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
45371188 |
atagtcgcaaaagggaattgtgtcagaagaataaccatatctcacctttaccaacaaacacactattttcccttagaaccaaaaagagacacaacatttt |
45371089 |
T |
|
| Q |
116 |
cannnnnnnnctctttaccaaagccaaaggtagctagaaaaagcagggcatgaaataattcaacttcctannnnnnnctctctgataaatcactcaatta |
215 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
45371088 |
cattttttttctctttaccaaagccaaaggtagctagaaaaagcagggcatgaaataattcaacttcctatttttttttttctgataaatcactcaatta |
45370989 |
T |
|
| Q |
216 |
tttgtcactgcacacaacgttacaagaaacaatcatctctcggtatatctttctgcagatgagcaaatcacaaatcagcaactccactcaacttcttatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45370988 |
tttgtcactgcacacaacgttacaagaaacaatcatctctcggtatatctttctgcagatgagcaaatcacaaatcagcaactccactcaacttcttatg |
45370889 |
T |
|
| Q |
316 |
tcaagtgaaatttttgtcctgccgaaaaaacgaaccaaatcaaatttcatctatgaagtacactatggtatgataatgctataaactccacaatttacca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45370888 |
tcaagtgaaatttttgtcctgccgaaaaaacgaaccaaatcaaatttcatctatgaagtacactatggtatgataatgctataaactccacaatttacca |
45370789 |
T |
|
| Q |
416 |
agacataaaccaagcacctctgttttgattatttgaactttgttggtgatttgacaaatagtaacagtctgaacaatggtcggggaatatcctctccttg |
515 |
Q |
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| T |
45370788 |
agacataaaccaagcacctctgttttgattatttgaactttgtcggtgatttgacaaatagtaacagtctgaacaatggtcggggaatatcctctccttg |
45370689 |
T |
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| Q |
516 |
agcggctcacaagcttccggaaaaaccatgtcagagtatcctctaatgttagagcagttccatggatagttt |
587 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45370688 |
agcggctcacaagcttccggaaaaaccatgtcagagtatcctctaatgttagagcagttccatggatagttt |
45370617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 588
Target Start/End: Original strand, 38485014 - 38485126
Alignment:
| Q |
476 |
gtaacagtctgaacaatggtcggggaatatcctctccttgagcggctcacaagcttccggaaaaaccatgtcagagtatcctctaatgttagagcagttc |
575 |
Q |
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|||||||| |||| ||| || || ||||| ||||| ||||| ||||||||| ||||||| |||||| |||||||||||| ||| || ||||||||| |
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| T |
38485014 |
gtaacagtttgaaacatgatcaggaaatattctctcattgagttgctcacaagattccggagaaaccaattcagagtatcctttaacgtccgagcagttc |
38485113 |
T |
|
| Q |
576 |
catggatagtttt |
588 |
Q |
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||||||| ||||| |
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| T |
38485114 |
catggattgtttt |
38485126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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