View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5690_low_28 (Length: 236)
Name: NF5690_low_28
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5690_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 41066596 - 41066812
Alignment:
| Q |
5 |
aggtgggaggagattggtttatcaaatggtgttaaaatatagtttaaatgtgtaatgaacaataaattaggcagagaagtgaagggttattaagaagaga |
104 |
Q |
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| T |
41066596 |
aggtgggaggagattggtttatcaaatggtgttaaaatatagtttaaatgtgtaatgaacaataa-ttaggcagagaagtgaagggttattaagaagaga |
41066694 |
T |
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| Q |
105 |
ttggctgtgatagagggtgaagagatttaagagagttgtttgtttctgagcaagaagagtgaggaaaagtgatttatataaaagaaagaaaggatgttgt |
204 |
Q |
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| T |
41066695 |
ttggctgtgatagagggtgaagagatttaagagagttgtttgtttctgagcaagaagagtgaggaaaagtgatttatataaaagaaagaaaggatgttgt |
41066794 |
T |
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| Q |
205 |
aaaacagaaagttgggac |
222 |
Q |
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| T |
41066795 |
aaaacagaaagttgggac |
41066812 |
T |
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Back To:
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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 17770877 - 17770933
Alignment:
| Q |
162 |
agtgaggaaaagtgatttatataaaagaaagaaaggatgttgtaaaacagaaagttg |
218 |
Q |
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| T |
17770877 |
agtgaggaaaagtgatttatataaaagaaagaaaggatgtggtaaaatagaaagttg |
17770933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 17770812 - 17770871
Alignment:
| Q |
77 |
agagaagtgaagggttattaagaagagattggctgtgatagagggtgaagagatttaagagag |
139 |
Q |
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| T |
17770812 |
agagaagtgaagggttaataaga---gattggttgtgatagagggtgaagagatttaagagag |
17770871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 5391803 - 5391758
Alignment:
| Q |
94 |
ttaagaagagattggctgtgatagagggtgaagagatttaagagag |
139 |
Q |
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| T |
5391803 |
ttaagaagagattggttgtgatagagggtgaattgatttaagagag |
5391758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 196
Target Start/End: Complemental strand, 5391756 - 5391726
Alignment:
| Q |
166 |
aggaaaagtgatttatataaaagaaagaaag |
196 |
Q |
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| T |
5391756 |
aggaaaagtgatttatataaaagaaagaaag |
5391726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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