View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5690_low_3 (Length: 500)
Name: NF5690_low_3
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5690_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 7e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 239 - 481
Target Start/End: Original strand, 1889693 - 1889934
Alignment:
| Q |
239 |
atatacgagttatattctttaatgatgtgaaatcacatttaattactcgacatttcaactttggattaaaaaactctcttacaannnnnnnnnnnnnnnn |
338 |
Q |
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| T |
1889693 |
atatacaagttatattctttaatgatgtgaaatcacatttaattactcgacatttcaactttggattaaaaaactctcttacaattttattttttatttt |
1889792 |
T |
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| Q |
339 |
nctaatgcaacnnnnnnnnnttctttctcatttacattgattaaatgtaatcatattcctttattaaaaaatataatcatattattttgaaatacattat |
438 |
Q |
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| T |
1889793 |
tctaatgcaacaaaaaaaa-ttctttctcatttacattggttaaatgtaatcatattcctttatttaaaaatataatcatattattttgaaatacattat |
1889891 |
T |
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| Q |
439 |
ttatggtccaaacgagcattgtcacatataactctacattatt |
481 |
Q |
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| T |
1889892 |
ttatggtccaaacgagcattgtcacatataactctacattatt |
1889934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 1889511 - 1889634
Alignment:
| Q |
71 |
ttaaaagcttcttatacttacttgcttctttcaaacacaaacacacttaatttttattggatattggtgtaagactatcttacacctcgtccaatttttc |
170 |
Q |
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| T |
1889511 |
ttaaaagcttcttatacttatttgcttctttcaaacacaaacacacttaatttttattggatgttggtgtaaga-----ttacacctcgtccaatttttc |
1889605 |
T |
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| Q |
171 |
ttaattatttaagtttcttacaaatataa |
199 |
Q |
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| T |
1889606 |
ttaattatttaagtttcttacaaatataa |
1889634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 27906807 - 27906861
Alignment:
| Q |
21 |
aaaattgcttttctcacatcaaaagttttttaaaaacacatcaaaatgacttaaa |
75 |
Q |
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| T |
27906807 |
aaaattgtttttctcacatcaaattttttctaaaagcacataaaaatgacttaaa |
27906861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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