View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5690_low_6 (Length: 432)
Name: NF5690_low_6
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5690_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 35805503 - 35805919
Alignment:
| Q |
1 |
cccgaatattgtttcaattttctccaaatcattcattaagttacatcaaataactttgtcaattctatcataatactaatatggatcgattccctttgca |
100 |
Q |
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| T |
35805503 |
cccgaatattgtttcaattttctccaaatcattcattaagttacatcaaataactttgtcaattctatcataatactaatatggatcgattccctttgca |
35805602 |
T |
|
| Q |
101 |
gatagttagatcaaaaccctaaatgatgaaattgagggtggaagccaagggtccacggtggcagtggtgggggaattatgtaagcaccggtggtggtgaa |
200 |
Q |
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| T |
35805603 |
gatagttagatcaaaaccctaaatgatgaaattgagggtggaagccaagggtccacggtggcagtggtgggggaattatgtaagcaccggtggtggtgaa |
35805702 |
T |
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| Q |
201 |
tagtacatatatctcatgagacatttgaaagcaaccctcatggctaccttgagtggtcttcatgttgtggacaaggccagcaagtggtgttgtttaactt |
300 |
Q |
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| T |
35805703 |
tcgtacatatatctcatgagacatttgaaagcaaccctcatggctaccttgagtggtcttcatgttgtggacaaggccaacaagtggtgttgtttcactt |
35805802 |
T |
|
| Q |
301 |
caattctaactagcctcttaatttacaaactagcctcttaatttacattaataaattcatatgcaattgcgtggtggagatttatatttatcacaatttt |
400 |
Q |
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| T |
35805803 |
caattctaactagcctcttaatttacaaactagcctcttaatttacattaataaattcatatgcaattgcgtggtggagatttatatttatcacaatttt |
35805902 |
T |
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| Q |
401 |
gatggtggtggtgtgat |
417 |
Q |
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| T |
35805903 |
gatggtggtggtatgat |
35805919 |
T |
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