View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5690_low_8 (Length: 423)

Name: NF5690_low_8
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5690_low_8
NF5690_low_8
[»] chr3 (10 HSPs)
chr3 (1-414)||(23017401-23017814)
chr3 (91-217)||(23033194-23033320)
chr3 (317-414)||(23036509-23036606)
chr3 (328-414)||(23140385-23140471)
chr3 (317-414)||(23039380-23039477)
chr3 (328-414)||(23024611-23024697)
chr3 (317-411)||(23146262-23146356)
chr3 (317-399)||(23033053-23033135)
chr3 (328-414)||(23149097-23149183)
chr3 (155-215)||(50552920-50552980)
[»] chr6 (2 HSPs)
chr6 (320-414)||(21780152-21780246)
chr6 (116-192)||(32863449-32863525)
[»] scaffold0554 (1 HSPs)
scaffold0554 (317-414)||(6318-6415)
[»] chr8 (2 HSPs)
chr8 (133-215)||(41317780-41317862)
chr8 (115-199)||(43124224-43124307)
[»] chr7 (1 HSPs)
chr7 (160-215)||(37697521-37697576)
[»] chr4 (1 HSPs)
chr4 (126-215)||(34207849-34207938)
[»] chr5 (1 HSPs)
chr5 (116-164)||(43537591-43537639)


Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 23017814 - 23017401
Alignment:
Q  1 gaagctgtgaaatattttcttcgtgatttgtatattatattatgcagtaatggatgctatgtacgacttgtcctttgaagtagtctccatttactttcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23017814 gaagctgtgaaatattttcttcgtgatttgtatattatattatgcagtaatggatgctatgtacgacttgtcctttgaagtagtgtccatttactttcca 23017715  T
Q  101 tgtatcatgtttttgtaaacatcgtagaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcattttaagaaata 200  Q
    |||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  23017714 tgttccatgtttttgtatacatcgtagaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcaacatttgaagaaata 23017615  T
Q  201 tcgaaaatgtcaaaatacaggtttatttatttatgaaaatatagcattatatgaatcttctccctatcactactacacaaatatctccttaaacatcctt 300  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  23017614 tggaaaacgtcaaaatacaggtttatttatttatgaaaatatagcattatatgaatcttctccctatcactactacagaaatatctctttaaatatcctt 23017515  T
Q  301 cgattagcttgacctaatagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataagg 400  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23017514 cgattagcttgacctaatagctacttttcaggacattttcggtggtggaggtgagacatcagcaagcaccacagattgggcaatgatagaaatgataagg 23017415  T
Q  401 aatccaagaataat 414  Q
    ||||||||||||||    
T  23017414 aatccaagaataat 23017401  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 23033320 - 23033194
Alignment:
Q  91 ttactttccatgtatcatgtttttgtaaacatcgtagaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcatt 190  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||| ||| ||||| ||||||| ||||    
T  23033320 ttactttccatgtttcatgtttttgtaaacatcatagaatatagattcagtgtttctctcaccattttcttttacaagttttaaaaacagattcaacatt 23033221  T
Q  191 ttaagaaatatcgaaaatgtcaaaata 217  Q
    || |||||| | ||||| || ||||||    
T  23033220 tttagaaattttgaaaacgttaaaata 23033194  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 317 - 414
Target Start/End: Complemental strand, 23036606 - 23036509
Alignment:
Q  317 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 414  Q
    |||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||    
T  23036606 atagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataat 23036509  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 328 - 414
Target Start/End: Complemental strand, 23140471 - 23140385
Alignment:
Q  328 tcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 414  Q
    |||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  23140471 tcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataat 23140385  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 317 - 414
Target Start/End: Complemental strand, 23039477 - 23039380
Alignment:
Q  317 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 414  Q
    |||||||||| ||||||| |||| | || |||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||    
T  23039477 atagctacttttcaggacgtttttggtgctggaggtgagacatcagcaagcaccatagactgggcaatggtagaaatgataagggatccaagaataat 23039380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 328 - 414
Target Start/End: Complemental strand, 23024697 - 23024611
Alignment:
Q  328 tcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 414  Q
    |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||||||||||    
T  23024697 tcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaagaatccaagaataat 23024611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 317 - 411
Target Start/End: Complemental strand, 23146356 - 23146262
Alignment:
Q  317 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaat 411  Q
    ||||||||||  ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||| | ||||||||||    
T  23146356 atagctactttacaggacatttttgctgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaattggtaaaggatccaagaat 23146262  T

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Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 23033135 - 23033053
Alignment:
Q  317 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataag 399  Q
    |||||||||| |||||||||||| | || |||||| ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  23033135 atagctacttttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcgatgacagaaatgataag 23033053  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 328 - 414
Target Start/End: Complemental strand, 23149183 - 23149097
Alignment:
Q  328 tcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 414  Q
    |||||||||||| | || |||||| ||||||||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||||    
T  23149183 tcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcaatggtagagatggtaaaggatccaagaataat 23149097  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 50552920 - 50552980
Alignment:
Q  155 tttccttttacaattttaaaaaagagattcagcattttaagaaatatcgaaaatgtcaaaa 215  Q
    |||||||||||||||||  |||| ||||  ||||||||||||||| | |||||||||||||    
T  50552920 tttccttttacaatttttgaaaatagatctagcattttaagaaattttgaaaatgtcaaaa 50552980  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 320 - 414
Target Start/End: Complemental strand, 21780246 - 21780152
Alignment:
Q  320 gctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 414  Q
    ||||||| ||||||||| || | || |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||    
T  21780246 gctacttttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatggtaagggatccaagaataat 21780152  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 32863449 - 32863525
Alignment:
Q  116 taaacatcgtagaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcatttt 192  Q
    |||||||  |||||||||||||||||| |  |||||||||||||||||||| || | ||||| ||||||| ||||||    
T  32863449 taaacatgatagaatatagattcaatactcttctcaccatttccttttacagttgttaaaaacagattcaacatttt 32863525  T

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Target: scaffold0554 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 414
Target Start/End: Original strand, 6318 - 6415
Alignment:
Q  317 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 414  Q
    |||||||||| | |||||||||| | || ||||||||| |||||||||| |||||||||||||||||||  ||||||||||||| | |||||||||||    
T  6318 atagctactttttaggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatggcagaaatgataagggagccaagaataat 6415  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 41317780 - 41317862
Alignment:
Q  133 agattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcattttaagaaatatcgaaaatgtcaaaa 215  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||| | ||  |||| ||||| |||||| |||||||||||||    
T  41317780 agatccaatatttctctcaccattttcttttacaattttcaaaaacaaatcaagcaatttaaaaaatattgaaaatgtcaaaa 41317862  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 43124224 - 43124307
Alignment:
Q  115 gtaaacatcgtagaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcattttaagaaat 199  Q
    ||||||||  ||||||||| || ||||||||||||  ||||||| |||||||||||| | ||| ||||| |||||||| ||||||    
T  43124224 gtaaacataatagaatatatatccaatatttctctttccatttc-ttttacaatttttataaacagatttagcattttcagaaat 43124307  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 37697576 - 37697521
Alignment:
Q  160 ttttacaattttaaaaaagagattcagcattttaagaaatatcgaaaatgtcaaaa 215  Q
    ||||||||||||  |||| |||||||||| |||||||||| | |||||||||||||    
T  37697576 ttttacaattttttaaaatagattcagcagtttaagaaattttgaaaatgtcaaaa 37697521  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 34207849 - 34207938
Alignment:
Q  126 agaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcattttaagaaatatcgaaaatgtcaaaa 215  Q
    ||||||||||| ||||||||| |||| |||||  ||||||||| ||  |||| ||||  || ||||| |||||||| ||||||| |||||    
T  34207849 agaatatagatccaatatttccctcagcattttattttacaatatttgaaaatagatctagaatttttagaaatattgaaaatgccaaaa 34207938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 43537591 - 43537639
Alignment:
Q  116 taaacatcgtagaatatagattcaatatttctctcaccatttcctttta 164  Q
    ||||||| | |||||||||||| ||||||| ||||||||||| ||||||    
T  43537591 taaacataggagaatatagatttaatatttttctcaccattttctttta 43537639  T

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