View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5690_low_9 (Length: 396)
Name: NF5690_low_9
Description: NF5690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5690_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 386
Target Start/End: Original strand, 7738151 - 7738522
Alignment:
| Q |
6 |
aaaaagggatatacaaaaccattgttccaaaaccaaagtcaataatttgtaagaacagaagcaaatatgtaaaactattagtccaagttagattgcaaac |
105 |
Q |
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| T |
7738151 |
aaaaagggatatacaaaaccattgttccaaaaccaaagtcaataatttgtaagaacagaagcaaatatgtaaaactattagtccaagttagattgcaaac |
7738250 |
T |
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| Q |
106 |
ttgtattttggtttcatccttctttaacgcactcactaatacatcattacctctacattgacttatttgtgggaaagccaagttatgtcactaaccaaac |
205 |
Q |
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| T |
7738251 |
ttgtattttggtttcc---------aacccactcactaatacatcattacctctgcattgacttatttgtgggaaagccaagttatgtcactagccaaac |
7738341 |
T |
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| Q |
206 |
acataaaagttgattaccactttgtcaaagaaaatatcctttcgagcatcctcaagacattttttcggaatttcagggatcggcaagcagacatgtagac |
305 |
Q |
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| T |
7738342 |
acataaaagttgattaccactttgtcaaagaaaatatcctttcgagcatcctcaagacattttttcggaatttcaaggatcggcaagcagacatgtagac |
7738441 |
T |
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| Q |
306 |
aaggtactccaagtgctctagtttgaagaaaagtattgattttaatggtagttttggttgattcattccttttaacctttg |
386 |
Q |
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| T |
7738442 |
aaggtactccaaatgctctagtttgaagaaaagtattgattttaatggtagttttggttgattcattccttttaatctttg |
7738522 |
T |
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