View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5691_high_2 (Length: 448)
Name: NF5691_high_2
Description: NF5691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5691_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 1112795 - 1112335
Alignment:
| Q |
1 |
aactgttggatcgaaatcgaaaggtgcaaaacgtaagcaaattttga----------attctaaaacatcgatcttgaaatttggaccttccaatcttga |
90 |
Q |
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| T |
1112795 |
aactgttggatcgagatcgaaaggtgcaaaacgtaagcaaattttgatattttttgaattctaaaacatcgatcatgaaatttggaccttccaatcttga |
1112696 |
T |
|
| Q |
91 |
tttaacgatactaatacatacgctaaccgtgtgaatgcgtggaatttgtgactgcagtaaatccaaatctgactattttggtagcaaa------------ |
178 |
Q |
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| T |
1112695 |
tttaacgatactaatacatacgctaaccgtgtgaacgcgtggaatttgtgactgcagtaaatccaaatctgactattttggtagcaaatatcaacactca |
1112596 |
T |
|
| Q |
179 |
------aagttgtacctacaagaaacaaatgtgaaaagtttttccaaatctgactataccatacctatctttttccaactttttccattatactttttta |
272 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1112595 |
gaattaaagttgttcctactagaaacaaatgtgaaaagtttttccaaatctgactataccatacctatctttttccaactttt-ccattatactttttta |
1112497 |
T |
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| Q |
273 |
cagcagcaatcaaaagtttatcctgtaaataagaaaacaagaaaagtgagattcatgactctgtatagataatgatgttattggcaagaaattctctttg |
372 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1112496 |
cagcatcaatcaaaagtttatcctgtaaataagaaaacaagaaaagtgagattcatgactctgtatagataatgatgttattggcaagaaattctctttg |
1112397 |
T |
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| Q |
373 |
gttgaatagtttcttggtaaacaagtaactttaagaattgaatggtttgttgatccttacct |
434 |
Q |
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| T |
1112396 |
gttgaatagtttcttggtaaacaagtaactttaagaattgaatggtttgttgatccttacct |
1112335 |
T |
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