View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5691_high_3 (Length: 408)
Name: NF5691_high_3
Description: NF5691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5691_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 21 - 393
Target Start/End: Complemental strand, 41678002 - 41677631
Alignment:
| Q |
21 |
ttttgcttcaaatattttattttgtgctataaccgagcaacatagaaatatgtggtgagttgtgccatctcttgttatttatcaggactattgatgattg |
120 |
Q |
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| T |
41678002 |
ttttgcttcaaatattttattttgtgctataaccgagcaacatagaaatatgtggtgagttgtgccatctcttgttatttatcaggactattgatgattg |
41677903 |
T |
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| Q |
121 |
aattatctgtttttatggaaatcaaatagtgttttcaatgannnnnnnnattctatttaggaagtatgttt-atgttatgttggaaggtacttgtattat |
219 |
Q |
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| T |
41677902 |
aattatctgtttttatggaaatcaaa--gtgttttcaatgattttttttattctatttaggaagtatgttttatgttatgttggaaggtacttgtattat |
41677805 |
T |
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| Q |
220 |
tatatcaagaaacaaaatagtaaagctatgttatggtgaaataattgactcaaaaaatagtttcatctctgcagttgcgaatgttaatatcatctataaa |
319 |
Q |
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| T |
41677804 |
tatatcaagaaacaaaatggtaaagctatgttatggtgaaataattgactcaaaaaatagtttcatctctgcagttgcgaatgttaatatcatctataaa |
41677705 |
T |
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| Q |
320 |
acaatatcaaaaagatagagagtatccaaactcattctgaattttattttagactcagaattctaagacctatg |
393 |
Q |
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| T |
41677704 |
acaatatcaaaaagatagagagtatccaaactcattctgaattttattttggactcagaattctaagacctatg |
41677631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 41688638 - 41688556
Alignment:
| Q |
40 |
ttttgtgctataaccgagcaacatagaaatatgtggtgagttgtgccatctcttgttatttatcaggactattgatgattgaa |
122 |
Q |
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| T |
41688638 |
ttttgggctataattgagcaacatagaaatatgtggtgagttgtgccatctcttgtgttttataagtaatattgatgattgaa |
41688556 |
T |
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