View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5691_high_4 (Length: 374)
Name: NF5691_high_4
Description: NF5691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5691_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 358
Target Start/End: Complemental strand, 42234486 - 42234135
Alignment:
| Q |
8 |
ggacatcatcaccatattgacaattattaacaaataaaaaggagtgaaattgacatgtatgaacatttgatatattagaacgtgggttcaaatctgcagt |
107 |
Q |
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| T |
42234486 |
ggacgtcatcaccatattgacaattattaacaaataaaaaggagtgaaattgacatgtatgaacatttgatatattagaacgtgggttcaaatctgcagt |
42234387 |
T |
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| Q |
108 |
aacattcttctctaatctctacgactggcatgtgaatctcaacgctaaactaaatgggcagaatagtcttg-aggatatagaagtaaggaaccaaatcca |
206 |
Q |
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| T |
42234386 |
aacattcttctctaatctctacgactggcatgtgaatctcaacgctaaactaaatgggcagaatagtcttggaggatatagaagtaaggaaccaaatcca |
42234287 |
T |
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| Q |
207 |
aattctttgtgatcaaattatagctattcttctacgtaaacatatattccttgcatcttgtacacatattgttattctaatatttcatgctttcttttct |
306 |
Q |
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| T |
42234286 |
aattctttgtgatcaaattatagctattcttctacgtaaacatatatcccttgcatcttgtacacatattgttattctaatatttcatgctttcttttct |
42234187 |
T |
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| Q |
307 |
cgctgtcaaagacaaaataaaaaggttggagatagattcttagtatatgttg |
358 |
Q |
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| T |
42234186 |
cgctgtcaaagacaaaataaaaaggttggagatagattcttagtatatgttg |
42234135 |
T |
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