View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5691_low_1 (Length: 681)
Name: NF5691_low_1
Description: NF5691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5691_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 242 - 665
Target Start/End: Original strand, 21742911 - 21743336
Alignment:
| Q |
242 |
cacaccaacacattcaataattgattatattcatctccttatcgcagcagcaccatgaatagcagctatgtagaaaagctgtgtagctgtaagaataatc |
341 |
Q |
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| T |
21742911 |
cacaccaacacattcaataattgattatattcatctccttatcgcagcagcaccatgaatagcagctatgtagaaaagctgtgtagctgtaaggataatc |
21743010 |
T |
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| Q |
342 |
agaaaagcctccatagttttctgcaaaattgaataattcaaaactctctgttaagggaactttcataggaacatcagaaaatgacagtaaatatattttt |
441 |
Q |
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| T |
21743011 |
agaaaagcctccatagttttctgcaaaattgaataattcaaaactctttgttaagggaactttcataggaacatcagaaaatgacagtaaatatattttt |
21743110 |
T |
|
| Q |
442 |
tcctgtcttaccagacgagaatttctgatgttaagctgaatctctttgcatccaaagctgcacaaatcatattccacttaacttgttagtgaagtgatgt |
541 |
Q |
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| T |
21743111 |
tcctgtcttaccagacgagaatttctgatgttaagctgaatctctttgcatccaaagctgcacaaataatattccacttaacttgttagagaagtgatat |
21743210 |
T |
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| Q |
542 |
tacagaaatacgatttagtcagtacaaaaataaaataaaattgtacta-tagtatcc-aaggtttggaagaagggtttgcgatcgtaatctgtgtcacag |
639 |
Q |
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| T |
21743211 |
tacagaaatgcgatttagtttgtacaaaaaaaaaaaaagactgtactatttgtatccaaagggttggaagaaaggtttgtgatcgtaatctgtgtcacag |
21743310 |
T |
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| Q |
640 |
ttgtgaacaccattgaggcaacatca |
665 |
Q |
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| T |
21743311 |
ttgtgaacacgattgaggcaacatca |
21743336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 21742684 - 21742853
Alignment:
| Q |
15 |
ggaatgtccaaatttaagattcattttcacgcaaaaatactcttcttttcttttgtcttatgcttaaacagaagtgaaaatagtacagatgacataaatg |
114 |
Q |
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| T |
21742684 |
ggaatgtccaaatttaagattcattttcacgcaaaaatactcttcttttcttttgtcttatgcttaaacagaagtgaaaatagtacagatgatataaatg |
21742783 |
T |
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| Q |
115 |
ttgaatatcttttgtacacacattcattattcttaaccaatacaaatccaatcatgtaatataccacacc |
184 |
Q |
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| T |
21742784 |
ttgaatatcttttgtatacacattcattattcttaaccaatacaaatccaatcatgtaatataccacacc |
21742853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 285 - 369
Target Start/End: Complemental strand, 24751794 - 24751710
Alignment:
| Q |
285 |
gcagcagcaccatgaatagcagctatgtagaaaagctgtgtagctgtaagaataatcagaaaagcctccatagttttctgcaaaa |
369 |
Q |
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| T |
24751794 |
gcagcagcaccatgaatagcaactatgtagagaagctgtgtgactgaaaggataattatgaaagcttccatggttttctgcaaaa |
24751710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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