View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5691_low_2 (Length: 621)
Name: NF5691_low_2
Description: NF5691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5691_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 2 - 605
Target Start/End: Complemental strand, 35410318 - 35409716
Alignment:
| Q |
2 |
gagatactgtatgcaaattacgtgtgctgcctataaagattggtggcgatttgacatggaaggtcttcctgccgatcttaaaagaaggtaaagaagatag |
101 |
Q |
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| T |
35410318 |
gagatactgtatgcaaattacgtgtgctgcctataaagattggtggcggtttgacatggaaggtcttcctgccgatcttaaaagaaggtaaagaagatag |
35410219 |
T |
|
| Q |
102 |
tttccttcatcaaagttttctgtgcaatgagcttggttttacttgttctttcatttgttctttcactaagtgaagaagataagatctaactatttattct |
201 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410218 |
tttccttcatcaaagttttctgctcaatgagcttggttttacttgttctttcatttgttctttcactaagtgaagaagataagatctaactatttattct |
35410119 |
T |
|
| Q |
202 |
ttcnnnnnnnncagaggtttggcggttccagatgccactcagccacatggcattagactacttattgaagattatccttatgcggctgatggactcctca |
301 |
Q |
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| T |
35410118 |
ttcttttttt-cagaggtttggcggttccagatgccactcggccacatggcattagactacttattgaagattatccttatgcggctgatggactcctca |
35410020 |
T |
|
| Q |
302 |
tatggactagtatagagaagttggtcaggacctatgtgaaccattactacaaagatttgaatgccgtttcttctgacaatgaactccagtcctggtacaa |
401 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35410019 |
tatggtctagtatagagaagttggtcaggacctatgtgaaccattactacaaagatttgaatgccatttcttctgacaatgaactccagtcctggtacaa |
35409920 |
T |
|
| Q |
402 |
agaattcatcaacatggggcaccctgatcataaaaatgctacctggtggcctaaactaaacacccctgaggatctcatctccttgcttaccaccattatc |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409919 |
agaattcatcaacatggggcaccctgatcataaaaatgctacctggtggcctaaactaaacacccctgaggatctcatctccttgcttaccaccattatc |
35409820 |
T |
|
| Q |
502 |
tggactgtatcagcgcaacatgctgtcttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaattaatgcgaaaattaattccta |
601 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409819 |
tggactgtatcagcgcaacatgctgtcttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaattaatgcgaaaattaattccta |
35409720 |
T |
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| Q |
602 |
atga |
605 |
Q |
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|||| |
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| T |
35409719 |
atga |
35409716 |
T |
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