View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5691_low_5 (Length: 374)
Name: NF5691_low_5
Description: NF5691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5691_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 358
Target Start/End: Complemental strand, 42234486 - 42234135
Alignment:
| Q |
8 |
ggacatcatcaccatattgacaattattaacaaataaaaaggagtgaaattgacatgtatgaacatttgatatattagaacgtgggttcaaatctgcagt |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42234486 |
ggacgtcatcaccatattgacaattattaacaaataaaaaggagtgaaattgacatgtatgaacatttgatatattagaacgtgggttcaaatctgcagt |
42234387 |
T |
|
| Q |
108 |
aacattcttctctaatctctacgactggcatgtgaatctcaacgctaaactaaatgggcagaatagtcttg-aggatatagaagtaaggaaccaaatcca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42234386 |
aacattcttctctaatctctacgactggcatgtgaatctcaacgctaaactaaatgggcagaatagtcttggaggatatagaagtaaggaaccaaatcca |
42234287 |
T |
|
| Q |
207 |
aattctttgtgatcaaattatagctattcttctacgtaaacatatattccttgcatcttgtacacatattgttattctaatatttcatgctttcttttct |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42234286 |
aattctttgtgatcaaattatagctattcttctacgtaaacatatatcccttgcatcttgtacacatattgttattctaatatttcatgctttcttttct |
42234187 |
T |
|
| Q |
307 |
cgctgtcaaagacaaaataaaaaggttggagatagattcttagtatatgttg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42234186 |
cgctgtcaaagacaaaataaaaaggttggagatagattcttagtatatgttg |
42234135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University