View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5693-Insertion-3 (Length: 919)
Name: NF5693-Insertion-3
Description: NF5693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5693-Insertion-3 |
 | |
|
| [»] scaffold0513 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 826; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 826; E-Value: 0
Query Start/End: Original strand, 7 - 879
Target Start/End: Complemental strand, 50832837 - 50831965
Alignment:
| Q |
7 |
agtataggtcatatattgttgaatatgacattgaggatgttagtagccgttgcattctcatttgaatttcctggttggggatggatcttgcaagatttag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50832837 |
agtataggtcatatattgttgaatatgacattgaggatgttagtagccgttgcattctcatttgaatttcctggttggggatggatcttgcaagatttag |
50832738 |
T |
|
| Q |
107 |
cagctttctttttgttgtgttgggtttgattgtgaaaaatcacgatggagccgttgtttttaaagcctgcagattggaagaaattgcagtagagtcagcc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
50832737 |
cagctttctttttgttgtgttgggtttgattgtgaaaaatcacgatggagccgttgtttttaaaacctgcagattggaagaaattgcagtagagtcagcc |
50832638 |
T |
|
| Q |
207 |
ttagcagaagatttaggtgtgcgatggggtctgcaatgtgcaatctgctctagaaagaggtatctgaagcttgataatttcatctgatgctgagaatgta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50832637 |
ttagcagaagatttaggtgtgcgatggggtatgcaatgtgcaatctgctctagaaagaggtatctgaagcttgataatttcatctgatgctgagaatgta |
50832538 |
T |
|
| Q |
307 |
gtaaactgcatcttaggaaagagtttcagtgctggaattgacactgttatactagactgtaagcagctgctaaactcttttactattgctagaattatcc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
50832537 |
gtaaactgcatcttaggaaagagtttcagtgctggaattgacactgttatactagactgtaagcagctactaaactcttttactattgctagaattatcc |
50832438 |
T |
|
| Q |
407 |
atgttaaaagatgttttaatgtagaggcacgtgacatggccattctttctaagactgtaggatttaaagcttggatagggaatgcccctactgaactttt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50832437 |
atgttaaaagatgttttaatgtagaggcacgtgacatggccattctttctaagactgtaggatttaaagcttggatagggaatgcccctactgaactttt |
50832338 |
T |
|
| Q |
507 |
ggtaactgaaactgttgtaacctctttttagaagctgtgaaccagcttttcttcaatgaattaaatgtttgaacctnnnnnnnnngcttcaatctgctaa |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50832337 |
ggtaactgaaactgttgtaacctctttttagaagctgtgaaccagcttttcttcaatgaattaaatgtttgaacctaaaaaaaaaacttcaatctgctaa |
50832238 |
T |
|
| Q |
607 |
tcagttgtgattatgttaatttgcattggaatccatttctaaaattaaattaattataaggaaagggatatccatttctaataatgtgacaaagaaagct |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50832237 |
tcagttgtgattatgttaatttgcattggaatccatttctaaaattaaattaattataaggaaagggatatccatttctaataatgtgacaaagaaagct |
50832138 |
T |
|
| Q |
707 |
gctaaatcttattggaatcgtttaaatttgcagctaggtaaattatgagacaagcaaatgtaatttctttggactatgaaaatgcattagagagcaagaa |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50832137 |
gctaaatcttattggaatcgtttaaatttgcagctaggtaaattatgagacaagcaaatgtaatttctttggactatgaaaatgcattagagagcaagaa |
50832038 |
T |
|
| Q |
807 |
caatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagcttcccaata |
879 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50832037 |
caatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagcttcctaata |
50831965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 826; E-Value: 0
Query Start/End: Original strand, 7 - 879
Target Start/End: Original strand, 50843016 - 50843888
Alignment:
| Q |
7 |
agtataggtcatatattgttgaatatgacattgaggatgttagtagccgttgcattctcatttgaatttcctggttggggatggatcttgcaagatttag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50843016 |
agtataggtcatatattgttgaatatgacattgaggatgttagtagccgttgcattctcatttgaatttcctggttggggatggatcttgcaagatttag |
50843115 |
T |
|
| Q |
107 |
cagctttctttttgttgtgttgggtttgattgtgaaaaatcacgatggagccgttgtttttaaagcctgcagattggaagaaattgcagtagagtcagcc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
50843116 |
cagctttctttttgttgtgttgggtttgattgtgaaaaatcacgatggagccgttgtttttaaaacctgcagattggaagaaattgcagtagagtcagcc |
50843215 |
T |
|
| Q |
207 |
ttagcagaagatttaggtgtgcgatggggtctgcaatgtgcaatctgctctagaaagaggtatctgaagcttgataatttcatctgatgctgagaatgta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50843216 |
ttagcagaagatttaggtgtgcgatggggtatgcaatgtgcaatctgctctagaaagaggtatctgaagcttgataatttcatctgatgctgagaatgta |
50843315 |
T |
|
| Q |
307 |
gtaaactgcatcttaggaaagagtttcagtgctggaattgacactgttatactagactgtaagcagctgctaaactcttttactattgctagaattatcc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
50843316 |
gtaaactgcatcttaggaaagagtttcagtgctggaattgacactgttatactagactgtaagcagctactaaactcttttactattgctagaattatcc |
50843415 |
T |
|
| Q |
407 |
atgttaaaagatgttttaatgtagaggcacgtgacatggccattctttctaagactgtaggatttaaagcttggatagggaatgcccctactgaactttt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50843416 |
atgttaaaagatgttttaatgtagaggcacgtgacatggccattctttctaagactgtaggatttaaagcttggatagggaatgcccctactgaactttt |
50843515 |
T |
|
| Q |
507 |
ggtaactgaaactgttgtaacctctttttagaagctgtgaaccagcttttcttcaatgaattaaatgtttgaacctnnnnnnnnngcttcaatctgctaa |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50843516 |
ggtaactgaaactgttgtaacctctttttagaagctgtgaaccagcttttcttcaatgaattaaatgtttgaacctaaaaaaaaaacttcaatctgctaa |
50843615 |
T |
|
| Q |
607 |
tcagttgtgattatgttaatttgcattggaatccatttctaaaattaaattaattataaggaaagggatatccatttctaataatgtgacaaagaaagct |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50843616 |
tcagttgtgattatgttaatttgcattggaatccatttctaaaattaaattaattataaggaaagggatatccatttctaataatgtgacaaagaaagct |
50843715 |
T |
|
| Q |
707 |
gctaaatcttattggaatcgtttaaatttgcagctaggtaaattatgagacaagcaaatgtaatttctttggactatgaaaatgcattagagagcaagaa |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50843716 |
gctaaatcttattggaatcgtttaaatttgcagctaggtaaattatgagacaagcaaatgtaatttctttggactatgaaaatgcattagagagcaagaa |
50843815 |
T |
|
| Q |
807 |
caatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagcttcccaata |
879 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50843816 |
caatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagcttcctaata |
50843888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 7 - 649
Target Start/End: Complemental strand, 32792460 - 32791834
Alignment:
| Q |
7 |
agtataggtcatatattgttgaatatgacattgaggatgttagtagccgttgcattctcatttgaatttcctggttggggatggatcttgcaagatttag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32792460 |
agtataggtcatatattgttgaatatgacgttgaggatgttagtaaccgttgcatgctcatttgaatttcctagttggggatggatcttgcaagatttag |
32792361 |
T |
|
| Q |
107 |
cagctttctttttgttgtgttgggtttgattgtgaaaaatcacgatggagccgttgtttttaaagcctgcagattggaagaaattgcagtagagtcagcc |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32792360 |
cagctttctttttgttgggttgggtttgattgtgaaaaatcatgatggagccgttgtttttaaaacctgcagattggaagaaattgcagtagagccagcc |
32792261 |
T |
|
| Q |
207 |
ttagcagaagatttaggtgtgcgatggggtctgcaatgtgcaatctgctctagaaagaggtatctgaagcttgataatttcatctgatgctgagaatgta |
306 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | |
|
|
| T |
32792260 |
ttagcagaagctttaggtgtgcgatggggtctgcaatgtgcaatctgctctagaaagaggtatctcaagcttgataattgcatctgatgctgagaatgaa |
32792161 |
T |
|
| Q |
307 |
gtaaactgcatcttaggaaagagtttcagtgctggaattgacactgttatactagactgtaagcagctgctaaactcttttactattgctagaattatcc |
406 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32792160 |
gtaaactacatcttaggaaagagtttcactgctggaattgacactgttatactagactgtaaatagctactaaactcttttactattgctagaattatcc |
32792061 |
T |
|
| Q |
407 |
atgttaaaagatgttttaatgtagaggcacgtgacatggccattctttctaagactgtaggatttaaagcttggatagggaatgcccctactgaactttt |
506 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32792060 |
atgtaaaaagatgttttaatgtagaggcacatgacatggccattctttctaagactgtaggatttaaagcttggatagggaatgcccctactg------- |
32791968 |
T |
|
| Q |
507 |
ggtaactgaaactgttgtaacctctttttagaagctgtgaaccagcttttcttcaatgaattaaatgtttgaacctnnnnnnnnngcttcaatctgctaa |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
32791967 |
---------aactgttgtaacctctttttagaagctgtgaaccagcttttcttcaacgaattaaatgtttgaacctaaaaaaaaatcttcaatctgctaa |
32791877 |
T |
|
| Q |
607 |
tcagttgtgattatgttaatttgcattggaatccatttctaaa |
649 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32791876 |
tcagttgtgattatgttaatttgcattggaatccatttctaaa |
32791834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 772 - 879
Target Start/End: Complemental strand, 5574987 - 5574880
Alignment:
| Q |
772 |
tctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagct |
871 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||| | ||||| | ||||||||| ||||||| | || |||||||||||||||||||||| |||| |
|
|
| T |
5574987 |
tctttggactatgaaaatgcattagcgagcaagacaaattttattttacagccatatatatgtttttaccatagctttagtatttgtatgttcactagct |
5574888 |
T |
|
| Q |
872 |
tcccaata |
879 |
Q |
| |
|
||| |||| |
|
|
| T |
5574887 |
tcctaata |
5574880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 7 - 697
Target Start/End: Complemental strand, 24534636 - 24533946
Alignment:
| Q |
7 |
agtataggtcatatattgttgaatatgacattgaggatgttagtagccgttgcattctcatttgaatttcctggttggggatggatcttgcaagatttag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24534636 |
agtataggtcatatattgttgaatatgacgttgaggatgttagtaaccgttgcatgctcatttgaatttcctggttggggatggatcttgcaagatttag |
24534537 |
T |
|
| Q |
107 |
cagctttctttttgttgtgttgggtttgattgtgaaaaatcacgatggagccgttgtttttaaagcctgcagattggaagaaattgcagtagagtcagcc |
206 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
24534536 |
cagctttatttttgttgggttgggtttgattgtgaaaaatcatgatggagccgttgtttttaaaacctacagattggaagaaattgcagtagagccagcc |
24534437 |
T |
|
| Q |
207 |
ttagcagaagatttaggtgtgcgatggggtctgcaatgtgcaatctgctctagaaagaggtatctgaagcttgataatttcatctgatgctgagaatgta |
306 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| | |
|
|
| T |
24534436 |
ttagcagaagctttaggtgtgcgatggggtctgcaatgtgcaatttgctctagaaagaggtatctcaagcttgataattgcatctgatgctgagaattaa |
24534337 |
T |
|
| Q |
307 |
gtaaactgcatcttaggaaagagtttcagtgctggaattgacactgttatactagactgtaagcagctgctaaactcttttactattgctagaattatcc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24534336 |
gtaaactgcatcttaggaaagagtttcactgctggaattgacactgttatactagactgtaaacagctactaaactcttttactattgctagaattatcc |
24534237 |
T |
|
| Q |
407 |
atgttaaaagatgttttaatgtagaggcacgtgacatggccattctttctaagactgtaggatttaaagcttggatagggaatgcccctactgaactttt |
506 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24534236 |
atgtaaaaagatgttttaatgtagaggcacatgacatggctattctttctaagactgtaggatttaaagcttggatagggaatgcccctactgaactgtt |
24534137 |
T |
|
| Q |
507 |
ggtaactgaaactgttgtaacctctttttagaagctgtgaaccagcttttcttcaatgaattaaatgtttgaacctnnnnnnnnngcttcaatctgctaa |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
24534136 |
ggtaactgaaactgttgtaacctctttttagaagctgtgaaccagcttttcttcaacgaattaaatgtttgaacctaaaaaaaaaacttcaatctgctaa |
24534037 |
T |
|
| Q |
607 |
tcagttgtgattatgttaatttgcattggaatccatttctaaaattaaattaattataaggaaagggatatccatttctaataatgtgaca |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24534036 |
tcagttgtgattatgttaatttgcattggaatccatttctaaaattaaattaattataaggaaagggatatccatttctaataatgtgaca |
24533946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0513 (Bit Score: 93; Significance: 8e-45; HSPs: 1)
Name: scaffold0513
Description:
Target: scaffold0513; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 128 - 322
Target Start/End: Original strand, 7495 - 7682
Alignment:
| Q |
128 |
gggtttgattgtgaaaaatcacgatggagccgttgtttttaaagcctgcagattggaagaaattgcagtagagtcagccttagcagaagatttaggtgtg |
227 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||| ||| |||||| || |||| |||||||| |
|
|
| T |
7495 |
gggtttaattgtgaaaaatcacaatggagctgttgttttcaaagcctgcagattggaggaaattgcagtggagccagcctaagttgaagctttaggtgct |
7594 |
T |
|
| Q |
228 |
cgatggggtctgcaatgtgcaatctgctctagaaagaggtatctgaagcttgataatttcatctgatgctgagaatgtagtaaactgcatcttag |
322 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| || ||||||||||| |
|
|
| T |
7595 |
cgatgggg-------tttgcaatctgctctagaaagaggtatctcaagcttgattattgcatctgatgctgagaatgtagcaatctgcatcttag |
7682 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 772 - 879
Target Start/End: Original strand, 42318736 - 42318843
Alignment:
| Q |
772 |
tctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagct |
871 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||| |
|
|
| T |
42318736 |
tctttggactattaaaatgcattagagagcaagaccaatgtcattttgctgccatatatatgtttttcccatagctttagtatttttatgttcacaagct |
42318835 |
T |
|
| Q |
872 |
tcccaata |
879 |
Q |
| |
|
||| |||| |
|
|
| T |
42318836 |
tcctaata |
42318843 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 772 - 879
Target Start/End: Complemental strand, 45241071 - 45240964
Alignment:
| Q |
772 |
tctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagct |
871 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| ||||||||| | || ||||||||| ||||||||||||| |
|
|
| T |
45241071 |
tctttggactatgaaaatgcatcagagagcaacaccaatgtcattttgctgccatatatatgtttttcccgtagcattagtatttttatgttcacaagca |
45240972 |
T |
|
| Q |
872 |
tcccaata |
879 |
Q |
| |
|
||| |||| |
|
|
| T |
45240971 |
tcctaata |
45240964 |
T |
|
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Target: chr6 (Bit Score: 80; Significance: 5e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 772 - 879
Target Start/End: Complemental strand, 31662380 - 31662273
Alignment:
| Q |
772 |
tctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagct |
871 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||| |
|
|
| T |
31662380 |
tctttggactattaaaatgcattagagagcaagaccaatgtcattttgctgccatatatatgtttttcccatagctttagtatttttatgttcacaagct |
31662281 |
T |
|
| Q |
872 |
tcccaata |
879 |
Q |
| |
|
||| |||| |
|
|
| T |
31662280 |
tcctaata |
31662273 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 17721171 - 17721060
Alignment:
| Q |
128 |
gggtttgattgtgaaaaatcacgatggagccgttgtttttaaagcctgcagattggaagaaattgcagtagagtcagccttagcagaagatttaggtgtg |
227 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||| |||||||||| |||||||||| ||||||| ||| |||||||||| |||| |||||||||| |
|
|
| T |
17721171 |
gggtttgattgtgaaaaatcacgatgaagccattgttttcaaagcctgcacattggaagaacttgcagtggagccagccttagctgaagctttaggtgtg |
17721072 |
T |
|
| Q |
228 |
cgatggggtctg |
239 |
Q |
| |
|
||||| |||||| |
|
|
| T |
17721071 |
cgatgcggtctg |
17721060 |
T |
|
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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 17721051 - 17720996
Alignment:
| Q |
292 |
gatgctgagaatgtagtaaactgcatcttaggaaagagtttcagtgctggaattga |
347 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| || ||| ||||| |
|
|
| T |
17721051 |
gatgttgagaatgtagtaaactgcatcttaggaaagagtttcactgttgggattga |
17720996 |
T |
|
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Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 774 - 879
Target Start/End: Original strand, 6672091 - 6672196
Alignment:
| Q |
774 |
tttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagcttc |
873 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| || |||||||||||| ||||||||||||| || |
|
|
| T |
6672091 |
tttggactatgaaaatgcattagagagcaacaccaatgtcattttgctgccatatatatgtttttcccatagctttagtatttttatgttcacaagcatc |
6672190 |
T |
|
| Q |
874 |
ccaata |
879 |
Q |
| |
|
| |||| |
|
|
| T |
6672191 |
ctaata |
6672196 |
T |
|
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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 774 - 818
Target Start/End: Original strand, 21123312 - 21123356
Alignment:
| Q |
774 |
tttggactatgaaaatgcattagagagcaagaacaatgtcatttt |
818 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
21123312 |
tttggactatgaaaatgcattagagaacaagaccgatgtcatttt |
21123356 |
T |
|
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