View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5693-Insertion-4 (Length: 800)

Name: NF5693-Insertion-4
Description: NF5693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5693-Insertion-4
NF5693-Insertion-4
[»] chr6 (1 HSPs)
chr6 (8-798)||(12437797-12438588)
[»] chr2 (1 HSPs)
chr2 (389-798)||(2433398-2433807)
[»] chr5 (7 HSPs)
chr5 (330-790)||(41654474-41654931)
chr5 (330-790)||(41646939-41647396)
chr5 (330-790)||(41620592-41621049)
chr5 (490-789)||(41465666-41465965)
chr5 (496-563)||(7154484-7154551)
chr5 (502-644)||(41329041-41329183)
chr5 (502-644)||(41317000-41317142)
[»] chr3 (4 HSPs)
chr3 (496-644)||(22971933-22972081)
chr3 (495-644)||(22946385-22946534)
chr3 (496-596)||(22986259-22986359)
chr3 (502-614)||(22906286-22906398)
[»] chr1 (3 HSPs)
chr1 (502-644)||(12609893-12610035)
chr1 (508-644)||(15885832-15885968)
chr1 (495-644)||(12636982-12637131)
[»] chr8 (3 HSPs)
chr8 (624-672)||(5022210-5022258)
chr8 (496-644)||(23610199-23610347)
chr8 (735-790)||(5022259-5022314)
[»] scaffold0059 (1 HSPs)
scaffold0059 (508-644)||(62147-62283)
[»] chr4 (1 HSPs)
chr4 (63-109)||(22659684-22659730)


Alignment Details
Target: chr6 (Bit Score: 713; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 8 - 798
Target Start/End: Original strand, 12437797 - 12438588
Alignment:
Q  8 cttttcactacctttctaacctcacttagtatgaagtgagtattctagaatgatcaagtgctgtacaaaaacttactaatgatatcaattaaaacaaaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12437797 cttttcactacctttctaacctcacttagtatgaagtgagtattctagaatgatcaagtgctgtacaaaaacttactaatgatatcaattaaaacaaaac 12437896  T
Q  108 taggaagataaaactaaaagaattaacatcttcactaagtgattgaataatttagaacttaattgatcattaaatccatcaatgatgttattccaaacta 207  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12437897 taggaagataaaactaaaagaaataacatcttcactaagtgattgaataatttagaacttaattgatcattaaatccatcaatgatgttattccaaacta 12437996  T
Q  208 aataacaagatggataagttattttaaaacaaaatcacagatccaccaggttgcttaatgaaactcaacccttattcattaggtaccttnnnnnnnnnnn 307  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||               
T  12437997 aataacaagatggataagttattttaaaacaaaatcacagatgcaccaggttgcttaatgaaactcaacccttattcattaggtaccttaaaaagaaaaa 12438096  T
Q  308 nn-tcttagtctagagatacagaattgtaagaaatcggaattacaaatagatcatttttccttttggcctcagagcctaaagcttcagtcatgtctaaat 406  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12438097 aaatcttagtctagagatacagaattgtaagaaatcggaattacaaatagatcatttttccttttggcctcagagcctaaagcttcagtcatgtctaaat 12438196  T
Q  407 tttcatgactagttccagagggaagtccccaatcaaaatagtacaacaactgagccagaggaaattccataccaaattcggcgaacaagatgccgggaca 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12438197 tttcatgactagttccagagggaagtccccaatcaaaatagtacaacaactgagccagaggaaattccataccaacttcggcgaacaagatgccgggaca 12438296  T
Q  507 cattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctccttca 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12438297 cattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacaatcaataaatctctcaggattaaacttttctccttca 12438396  T
Q  607 ttccaatactttgggtctcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttctttacact 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  12438397 ttccaatactttgggtctcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttcaatacact 12438496  T
Q  707 ctcttggaattagtagaggaccaggagggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagattcatttca 798  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  12438497 ctcttggaattagtagaggaccaggagggtgcaatcttaaggtttctttaatcactgcttttaaatattttagttcttgaagatttatttca 12438588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 182; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 389 - 798
Target Start/End: Complemental strand, 2433807 - 2433398
Alignment:
Q  389 cttcagtcatgtctaaattttcatgactagttccagagggaagtccccaatcaaaatagtacaacaactgagccagaggaaattccataccaaattcggc 488  Q
    |||||||||| || |||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| | |  |  ||| ||    
T  2433807 cttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagc 2433708  T
Q  489 gaacaagatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcagga 588  Q
     ||   ||| || ||||| ||||| ||||| ||||||||||||||  |||| |||||||||||||||||||||| | ||| ||| || || |||||||||    
T  2433707 aaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaaattagaccctttgtaatcaactagacaatccatgaacctctcagga 2433608  T
Q  589 ttaaacttttctccttcattccaatactttgggtctcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaacca 688  Q
    | |||||||||||||||  ||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||| | ||||||| ||||||| |||| |     
T  2433607 taaaacttttctccttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttccagatggtattgtgtatccattaatct 2433508  T
Q  689 cacaattttctttacactctcttggaattagtagaggaccaggagggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaag 788  Q
    ||||| ||||  ||||||||||||| | ||||||||||| ||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||||||     
T  2433507 cacaagtttcaatacactctcttggtagtagtagaggactaggtgggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaaa 2433408  T
Q  789 attcatttca 798  Q
    ||| ||||||    
T  2433407 atttatttca 2433398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 7e-79; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 330 - 790
Target Start/End: Complemental strand, 41654931 - 41654474
Alignment:
Q  330 attgtaagaaatcggaattacaaatagatcatttttccttttggcctcagagcctaaagcttcagtcatgtctaaattttcatgactagttccagaggga 429  Q
    |||||||| ||| |||||||||||||||||| |||| |||||  |   || ||| || | |||||||||||| |||||||||||| | |||||||||||     
T  41654931 attgtaaggaattggaattacaaatagatcactttttcttttcactgtagcgccaaaggattcagtcatgtcaaaattttcatgagtggttccagagggg 41654832  T
Q  430 agtccccaatcaaaatagtacaacaactgagccagaggaaattccataccaaattcggcgaacaagatgccgggacacattcttcttccagcaccaaaag 529  Q
    |||  |||||||||| | |||| |||||| || ||||||| ||| |||| | || | || ||  |||| || |||||||||||  |||| ||||||||||    
T  41654831 agtttccaatcaaaagaatacagcaactgtgcaagaggaagttctatactagatgcagcaaaagagattccaggacacattctctttcctgcaccaaaag 41654732  T
Q  530 gtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctccttcattccaatactttgggtctcttcc 629  Q
    |||| ||||| |||||||||||| || ||||||||| |  ||| |  || ||||| |||| |||||||||||||||| ||||||||||| ||||||||||    
T  41654731 gtatgaactcaaaattagaccctctgaaatcaattgaagaatccaagaacctctctggataaaacttttctccttcaatccaatacttttggtctcttcc 41654632  T
Q  630 aattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttctttacactctcttggaattagtagaggacca 729  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||||||| || | | ||||| ||||  |||||||||| ||||  || | ||||  |    
T  41654631 aattgcccatgcattcacaaacacttgtgttccagctggtattgtgtatccatttatctcacaagtttcaatacactctctaggaa--ag-acaggatta 41654535  T
Q  730 ggagggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagat 790  Q
    ||||| |||| |||||| ||||||||||| |||||||||| |||||| |||||||||||||    
T  41654534 ggaggatgcactcttaatgtttctttaataactgcttttagatatttcagttcttgaagat 41654474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 330 - 790
Target Start/End: Complemental strand, 41647396 - 41646939
Alignment:
Q  330 attgtaagaaatcggaattacaaatagatcatttttccttttggcctcagagcctaaagcttcagtcatgtctaaattttcatgactagttccagaggga 429  Q
    |||||||| ||| |||||||||||||||||| |||| |||||  |   || ||| || | |||||||||||| |||||||||||| | |||||||||||     
T  41647396 attgtaaggaattggaattacaaatagatcactttttcttttcactgtagcgccaaaggattcagtcatgtcaaaattttcatgagtggttccagagggg 41647297  T
Q  430 agtccccaatcaaaatagtacaacaactgagccagaggaaattccataccaaattcggcgaacaagatgccgggacacattcttcttccagcaccaaaag 529  Q
    |||  |||||||||| | |||| |||||| || ||||||| ||| |||| | || | || ||  |||| || |||||||||||  |||| ||||||||||    
T  41647296 agtttccaatcaaaagaatacagcaactgtgcaagaggaagttctatactagatgcagcaaaagagattccaggacacattctctttcctgcaccaaaag 41647197  T
Q  530 gtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctccttcattccaatactttgggtctcttcc 629  Q
    |||| ||||| |||||||||||| || ||| |||||||  ||| |  || ||||| |||| |||||||||||||||| ||||||| |||  |||||||||    
T  41647196 gtatgaactcaaaattagaccctctgaaattaattggagaatccaagaacctctctggataaaacttttctccttcaatccaatatttttcgtctcttcc 41647097  T
Q  630 aattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttctttacactctcttggaattagtagaggacca 729  Q
    ||||||||||| |||||||| |||||||||||| ||||||||| ||||||| || | | ||||| ||||  |||||||||| ||||  || | ||||  |    
T  41647096 aattgcccatgaattcacaaacacttgtgttccagctggtattgtgtatccatttatctcacaagtttcaatacactctctaggaa--ag-ataggatta 41647000  T
Q  730 ggagggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagat 790  Q
    | ||||||||||||||||||||||||||| |||||||||| | |||| |||| ||||||||    
T  41646999 gaagggtgcaatcttaaggtttctttaataactgcttttagaaatttcagtttttgaagat 41646939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 330 - 790
Target Start/End: Original strand, 41620592 - 41621049
Alignment:
Q  330 attgtaagaaatcggaattacaaatagatcatttttccttttggcctcagagcctaaagcttcagtcatgtctaaattttcatgactagttccagaggga 429  Q
    |||||| | ||| |||||||||||||| ||| ||||| |||||||  ||  ||| || |||||||||||||| | ||||||||| ||  ||||| | ||     
T  41620592 attgtatggaattggaattacaaatagctcacttttctttttggctacactgccaaaggcttcagtcatgtcaagattttcatggctgattccaaatggt 41620691  T
Q  430 agtccccaatcaaaatagtacaacaactgagccagaggaaattccataccaaattcggcgaacaagatgccgggacacattcttcttccagcaccaaaag 529  Q
    | |  ||||||||||||| | |||||||| || ||||||| ||| ||   |  |   || ||||| ||||| |||||||||||  |||| ||||||||||    
T  41620692 aattgccaatcaaaatagaataacaactgtgcaagaggaagttctatggtaggtgtagcaaacaaaatgccaggacacattctctttcctgcaccaaaag 41620791  T
Q  530 gtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctccttcattccaatactttgggtctcttcc 629  Q
    |||  || || ||||| || ||||||||||||||||||  ||| |  || ||||| |||| |||||| ||||| ||| ||||||  ||| |||||||| |    
T  41620792 gtaagaaatcaaaattggatcctttgtaatcaattggagaatccaagaacctctctggataaaacttgtctccatcactccaatttttttggtctcttgc 41620891  T
Q  630 aattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttctttacactctcttggaattagtagaggacca 729  Q
    ||||||||||| |||||| | ||| ||||||||| | |||||| ||||||| || | | ||||| ||||   |||||||||| ||   |||| ||||  |    
T  41620892 aattgcccatgtattcactaacacgtgtgttccgcccggtattgtgtatccatttatctcacaagtttcagcacactctcttaga---agtaaaggatta 41620988  T
Q  730 ggagggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagat 790  Q
    ||||| |||| ||| |||||||||||||| |||||||||| | |||| ||||||| |||||    
T  41620989 ggaggatgcagtctgaaggtttctttaataactgcttttagaaatttcagttcttcaagat 41621049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 490 - 789
Target Start/End: Complemental strand, 41465965 - 41465666
Alignment:
Q  490 aacaagatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggat 589  Q
    ||||| || |||||||| ||||| || |||||||| || |||||  | || | |||||| ||||| |||||||||| ||  || | ||||||||| |||     
T  41465965 aacaaaataccgggacaaattctcctaccagcaccgaacggtatgtattcaatattagaacctttataatcaattgaactctccaaaaatctctccggaa 41465866  T
Q  590 taaacttttctccttcattccaatactttgggtctcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccac 689  Q
    ||||||||||   |||| ||||||||||||| ||||||||||| ||||||||||| || | |||||   |||||||  ||||| |||| || |||| | |    
T  41465865 taaacttttccggttcactccaatactttggatctcttccaatcgcccatgcatttactatcactttgtttccggcatgtattgtgtagcctttaatctc 41465766  T
Q  690 acaattttctttacactctcttggaattagtagaggaccaggagggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaaga 789  Q
    |||| ||||| | || ||||| || |  || |||||   |||||||||||||||||  |||||||| || |||||||| | |||||| ||| ||||||||    
T  41465765 acaagtttctctgcattctctagggagaagaagagggaaaggagggtgcaatcttagtgtttctttgatgactgctttcaaatatttcagtccttgaaga 41465666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 496 - 563
Target Start/End: Complemental strand, 7154551 - 7154484
Alignment:
Q  496 atgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaat 563  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| ||||||   |||||| |||||||    
T  7154551 atgcctggacacattcttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaat 7154484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 644
Target Start/End: Complemental strand, 41329183 - 41329041
Alignment:
Q  502 ggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctc 601  Q
    |||||||| ||||||||||||||||| ||||| || ||||| |  |  |||||| |||||||||||| || || ||| |||||||| |||||  | ||      
T  41329183 ggacacatccttcttccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattggactattaacaaacctctcaggtttaaaactctcag 41329084  T
Q  602 cttcattccaatactttgggtctcttccaattgcccatgcatt 644  Q
    |||||  ||||||| |||  ||||||||||| ||||| |||||    
T  41329083 cttcaacccaataccttgaatctcttccaatagcccaagcatt 41329041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 644
Target Start/End: Complemental strand, 41317142 - 41317000
Alignment:
Q  502 ggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctc 601  Q
    |||||||| || |||||||||||||| ||||| || ||||| |  |  |||||| |||||||||| | || || ||| |||||||| |||||  | ||      
T  41317142 ggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcag 41317043  T
Q  602 cttcattccaatactttgggtctcttccaattgcccatgcatt 644  Q
    |||||  ||||||| |||| ||||||||||| ||||| |||||    
T  41317042 cttcaacccaataccttggatctcttccaatagcccaagcatt 41317000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 496 - 644
Target Start/End: Original strand, 22971933 - 22972081
Alignment:
Q  496 atgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaact 595  Q
    ||||| ||||| |||||||||||||||||||| || ||  |||| ||||| |  |||||| ||||||  | || |||||||||||| ||||||| |||||    
T  22971933 atgcctggacaaattcttcttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaact 22972032  T
Q  596 tttctccttcattccaatactttgggtctcttccaattgcccatgcatt 644  Q
    | |||   ||| ||||||| ||||| || |||||||||||||| |||||    
T  22972033 tatctggatcagtccaatattttggatcccttccaattgcccaagcatt 22972081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 495 - 644
Target Start/End: Original strand, 22946385 - 22946534
Alignment:
Q  495 gatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaac 594  Q
    |||||| ||||| ||||| ||||| |||||||| || ||  |||| ||||| |  |||||| ||||||  | || |||||||||||| ||||||| ||||    
T  22946385 gatgcccggacaaattctccttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaac 22946484  T
Q  595 ttttctccttcattccaatactttgggtctcttccaattgcccatgcatt 644  Q
    || |||   ||| ||||||| ||||| || |||||||||||||| |||||    
T  22946485 ttatctggatcagtccaatattttggatcccttccaattgcccaagcatt 22946534  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 596
Target Start/End: Original strand, 22986259 - 22986359
Alignment:
Q  496 atgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaact 595  Q
    ||||| ||||| ||||| |||||||||||||| || ||  |||| |||||||  |||||| ||||||| | || ||||||||| |||||||||| |||||    
T  22986259 atgccaggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaact 22986358  T
Q  596 t 596  Q
    |    
T  22986359 t 22986359  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 502 - 614
Target Start/End: Original strand, 22906286 - 22906398
Alignment:
Q  502 ggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctc 601  Q
    ||||| || ||||| ||||||||||| ||||||||||| ||||     ||||||||||||| || || |||||| ||||| ||||||| ||| || |||     
T  22906286 ggacatatccttctcccagcaccaaatggtataaactcaaaatccacacctttgtaatcaactgaacaatcaattaatctttcaggataaaatttctctg 22906385  T
Q  602 cttcattccaata 614  Q
    ||||| |||||||    
T  22906386 cttcaatccaata 22906398  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 502 - 644
Target Start/End: Original strand, 12609893 - 12610035
Alignment:
Q  502 ggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctc 601  Q
    ||||| |||||||||||||||||||| || ||  |||| ||||||  ||||||||| ||||| |  | | | || |||||||| |||| |||||| |||     
T  12609893 ggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaacttctctg 12609992  T
Q  602 cttcattccaatactttgggtctcttccaattgcccatgcatt 644  Q
     |||| |||| |||||||| ||||||||||| |||||||||||    
T  12609993 gttcagtccagtactttggatctcttccaatcgcccatgcatt 12610035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 508 - 644
Target Start/End: Complemental strand, 15885968 - 15885832
Alignment:
Q  508 attcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctccttcat 607  Q
    ||||||||||||| ||||||||| ||  |||| ||||||  |||||| || ||||| |  | | |||| |||||||| |||| |||| | |||  ||||     
T  15885968 attcttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcag 15885869  T
Q  608 tccaatactttgggtctcttccaattgcccatgcatt 644  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  15885868 tccaatactttggatctcttccaatcgcccatgcatt 15885832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 644
Target Start/End: Original strand, 12636982 - 12637131
Alignment:
Q  495 gatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaac 594  Q
    |||||| || || ||||||||||| ||||||||||| ||  |||| ||||||   |||||||| ||||| |  | | |||| |||||||| |||| ||||    
T  12636982 gatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaac 12637081  T
Q  595 ttttctccttcattccaatactttgggtctcttccaattgcccatgcatt 644  Q
     | |||  |||| |||| |||||||| ||||| ||||||| |||||||||    
T  12637082 ctctctggttcagtccagtactttggatctctaccaattgtccatgcatt 12637131  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 624 - 672
Target Start/End: Original strand, 5022210 - 5022258
Alignment:
Q  624 tcttccaattgcccatgcattcacaagcacttgtgttccggctggtatt 672  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  5022210 tcttccaattgcccatgcattcacaagaacttgtgttcctgctggtatt 5022258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 496 - 644
Target Start/End: Original strand, 23610199 - 23610347
Alignment:
Q  496 atgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaact 595  Q
    ||||||||||| ||||| || ||||||||||| || || ||||| |||||||  |||  | ||||||| |  | ||||||||| || ||||||| |||||    
T  23610199 atgccgggacaaattctcctaccagcaccaaatggaatgaactcaaaattagttcctgagaaatcaatagagctatcaataaacctttcaggataaaact 23610298  T
Q  596 tttctccttcattccaatactttgggtctcttccaattgcccatgcatt 644  Q
    | |||   ||||||||||| || || || ||||| |||||||| |||||    
T  23610299 tatctgggtcattccaatatttaggatcccttcctattgcccaagcatt 23610347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 790
Target Start/End: Original strand, 5022259 - 5022314
Alignment:
Q  735 gtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagat 790  Q
    ||||| |||||||||||||||||||||| |||||| | |||| | |||||||||||    
T  5022259 gtgcattcttaaggtttctttaatcacttcttttagaaatttcaattcttgaagat 5022314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 508 - 644
Target Start/End: Original strand, 62147 - 62283
Alignment:
Q  508 attcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctccttcat 607  Q
    |||||| |||||||||||||||| ||  |||||||||||  ||| ||||| ||||| | || | |||| |||||||| |||| |||| | |||  |||      
T  62147 attctttttccagcaccaaaaggaatgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccg 62246  T
Q  608 tccaatactttgggtctcttccaattgcccatgcatt 644  Q
    |||| ||| |||| |||||||| ||||||||||||||    
T  62247 tccagtaccttggatctcttccgattgcccatgcatt 62283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 22659730 - 22659684
Alignment:
Q  63 aagtgctgtacaaaaacttactaatgatatcaattaaaacaaaacta 109  Q
    ||||| ||| ||||||||||||||||| |||||| ||||||||||||    
T  22659730 aagtgatgtccaaaaacttactaatgacatcaatcaaaacaaaacta 22659684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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