View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5693-Insertion-6 (Length: 440)

Name: NF5693-Insertion-6
Description: NF5693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5693-Insertion-6
NF5693-Insertion-6
[»] chr6 (12 HSPs)
chr6 (8-439)||(6921228-6921659)
chr6 (10-430)||(6942847-6943254)
chr6 (101-430)||(6935189-6935518)
chr6 (10-423)||(6947760-6948173)
chr6 (10-423)||(6954399-6954812)
chr6 (130-348)||(20770502-20770720)
chr6 (120-189)||(17369675-17369744)
chr6 (134-204)||(14749393-14749463)
chr6 (132-210)||(24254428-24254506)
chr6 (273-345)||(24950272-24950344)
chr6 (10-68)||(6935113-6935171)
chr6 (136-200)||(24950150-24950214)
[»] chr7 (58 HSPs)
chr7 (10-439)||(1985835-1986264)
chr7 (120-383)||(15571885-15572163)
chr7 (130-353)||(13416911-13417146)
chr7 (120-253)||(18514777-18514910)
chr7 (120-201)||(14076677-14076758)
chr7 (120-201)||(14386705-14386786)
chr7 (277-353)||(14076542-14076618)
chr7 (277-353)||(14386570-14386646)
chr7 (118-248)||(19344563-19344693)
chr7 (130-199)||(660847-660916)
chr7 (131-226)||(19604464-19604559)
chr7 (137-210)||(22021382-22021455)
chr7 (130-238)||(6864807-6864914)
chr7 (131-215)||(29867221-29867305)
chr7 (132-206)||(22028622-22028696)
chr7 (130-200)||(29454103-29454173)
chr7 (131-189)||(29881267-29881325)
chr7 (132-200)||(12819918-12819986)
chr7 (132-204)||(19351071-19351143)
chr7 (130-226)||(20058057-20058153)
chr7 (130-206)||(20352089-20352165)
chr7 (130-206)||(22063636-22063712)
chr7 (130-226)||(22100467-22100563)
chr7 (130-194)||(29874517-29874581)
chr7 (117-200)||(29921980-29922063)
chr7 (267-353)||(18514945-18515031)
chr7 (153-210)||(9807814-9807871)
chr7 (131-204)||(18952906-18952979)
chr7 (131-204)||(18982953-18983026)
chr7 (131-204)||(18997599-18997672)
chr7 (131-207)||(20338917-20338993)
chr7 (273-341)||(24385051-24385119)
chr7 (122-201)||(22070110-22070189)
chr7 (289-336)||(24391269-24391316)
chr7 (134-225)||(36263028-36263119)
chr7 (132-210)||(19325987-19326065)
chr7 (130-200)||(19637217-19637287)
chr7 (120-206)||(20374493-20374579)
chr7 (130-200)||(29859454-29859524)
chr7 (131-200)||(29106814-29106883)
chr7 (130-215)||(29431001-29431086)
chr7 (137-206)||(29445663-29445732)
chr7 (146-242)||(15443922-15444018)
chr7 (132-204)||(19357906-19357978)
chr7 (132-200)||(19722018-19722086)
chr7 (150-206)||(22080862-22080918)
chr7 (132-200)||(29899374-29899442)
chr7 (130-189)||(19645630-19645689)
chr7 (134-225)||(36260228-36260319)
chr7 (134-208)||(13888098-13888172)
chr7 (308-362)||(16839559-16839613)
chr7 (132-178)||(19374778-19374824)
chr7 (134-200)||(21218712-21218778)
chr7 (120-198)||(24002201-24002279)
chr7 (146-243)||(26256732-26256829)
chr7 (146-242)||(15508704-15508800)
chr7 (153-189)||(20133340-20133376)
chr7 (153-189)||(20140841-20140877)
[»] chr4 (19 HSPs)
chr4 (121-243)||(53774797-53774919)
chr4 (130-243)||(3565701-3565814)
chr4 (130-206)||(11970982-11971058)
chr4 (130-206)||(3557720-3557796)
chr4 (130-206)||(11981683-11981759)
chr4 (130-238)||(3560958-3561066)
chr4 (130-243)||(8443454-8443567)
chr4 (134-207)||(837769-837842)
chr4 (135-201)||(35767017-35767083)
chr4 (129-206)||(6372439-6372516)
chr4 (131-200)||(53430100-53430169)
chr4 (302-351)||(53774701-53774750)
chr4 (130-194)||(1686285-1686349)
chr4 (131-206)||(6392815-6392893)
chr4 (132-176)||(53790577-53790621)
chr4 (130-189)||(6113090-6113149)
chr4 (168-243)||(10475164-10475239)
chr4 (170-243)||(10464226-10464299)
chr4 (124-200)||(10468042-10468118)
[»] chr2 (12 HSPs)
chr2 (120-226)||(14514874-14514980)
chr2 (132-206)||(18908811-18908885)
chr2 (132-206)||(18920767-18920841)
chr2 (132-205)||(18913559-18913632)
chr2 (130-205)||(554471-554546)
chr2 (146-201)||(20975557-20975612)
chr2 (288-353)||(20712691-20712756)
chr2 (146-200)||(25698507-25698561)
chr2 (288-353)||(14514730-14514795)
chr2 (298-355)||(20967545-20967602)
chr2 (130-202)||(25377072-25377144)
chr2 (311-353)||(20699621-20699663)
[»] chr5 (7 HSPs)
chr5 (120-353)||(18964820-18965056)
chr5 (132-243)||(29647633-29647744)
chr5 (132-206)||(29597554-29597628)
chr5 (132-211)||(29642348-29642427)
chr5 (131-206)||(24330900-24330975)
chr5 (149-198)||(23086784-23086833)
chr5 (137-205)||(28763912-28763980)
[»] chr1 (9 HSPs)
chr1 (129-200)||(4570927-4570998)
chr1 (129-201)||(50645484-50645556)
chr1 (131-206)||(21855384-21855459)
chr1 (131-197)||(4014966-4015032)
chr1 (130-200)||(39379061-39379131)
chr1 (131-200)||(10218985-10219054)
chr1 (130-195)||(15961233-15961298)
chr1 (129-200)||(17560772-17560843)
chr1 (131-193)||(4016773-4016835)
[»] chr3 (4 HSPs)
chr3 (130-194)||(3625740-3625804)
chr3 (130-202)||(25901279-25901351)
chr3 (130-202)||(25915297-25915369)
chr3 (149-205)||(3837904-3837960)
[»] scaffold0354 (2 HSPs)
scaffold0354 (120-189)||(7474-7543)
scaffold0354 (17-53)||(7607-7643)
[»] scaffold0867 (1 HSPs)
scaffold0867 (130-226)||(4669-4765)
[»] chr8 (7 HSPs)
chr8 (120-218)||(27618473-27618571)
chr8 (146-198)||(29390288-29390340)
chr8 (166-206)||(42846461-42846501)
chr8 (146-198)||(11338592-11338644)
chr8 (146-198)||(11339435-11339487)
chr8 (146-198)||(11345117-11345169)
chr8 (131-175)||(29157073-29157117)
[»] scaffold0097 (1 HSPs)
scaffold0097 (288-353)||(16530-16595)
[»] scaffold0242 (2 HSPs)
scaffold0242 (137-206)||(13737-13806)
scaffold0242 (137-206)||(22572-22641)
[»] scaffold0267 (1 HSPs)
scaffold0267 (149-205)||(13385-13441)


Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Original strand, 6921228 - 6921659
Alignment:
Q  8 atattgatagcaaatatcaatgtatcaccattctcagaaaaacacattggtgtcaatcgagagcgatgaaataatgaatcattatataactcctgagttt 107  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6921228 atattgatagcaaatatcaatgtatcaccattctcggaaaaacacattggtgtcaatcgagagcgatgaaataatgaatcattatataactccttagttt 6921327  T
Q  108 taaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtttt 207  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921328 taaaattgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtttt 6921427  T
Q  208 cttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttgggacattatgtagctcttcatcacaacatcgagggagcaacaattgtgta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921428 cttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggagcaacaattgtgta 6921527  T
Q  308 tatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaacacaccaactaacac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921528 tatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaacacaccaactaacac 6921627  T
Q  408 tacttttcaaataaacgccatttcgcacatac 439  Q
    ||||||||||||||||||||||||||||||||    
T  6921628 tacttttcaaataaacgccatttcgcacatac 6921659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 430
Target Start/End: Original strand, 6942847 - 6943254
Alignment:
Q  10 attgatagcaaatatcaatgtatcaccattctcagaaaaacacattggtgtcaatcgagagcgatgaaataatgaatcattatataactcctgagtttta 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||  |||||| |   |||| |||||||||||||||||| ||||||||| |||||    
T  6942847 attgattgcaaatatcaatgtatcaccattctcagaaaaacacaatggcctcaatccaagacgataaaataatgaatcattatagaactcctgaatttta 6942946  T
Q  110 aaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttct 209  Q
    ||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | |||||||||| ||||||||    
T  6942947 aaatcgtttagaagatttgtatatctaattttaaggaattgcgtctaagattcttcaactccaaattccttcatttgctaaataacaaaataggttttct 6943046  T
Q  210 tagaatcataagaaaaatagaggcaatccatcaatacagaaagagttgggacattatgtagctcttcatcacaacatcgagggagcaacaattgtgtata 309  Q
    || ||||||||||||||||||||||||||||             || || | || |||||||||||||||||||||| ||||||||||||||| ||||||    
T  6943047 taaaatcataagaaaaatagaggcaatccat-------------gtaggaaaatcatgtagctcttcatcacaacattgagggagcaacaattttgtata 6943133  T
Q  310 tgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaacacaccaactaacacta 409  Q
    ||||||||||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||||||| ||||| |  ||||||||||||||||| ||||    
T  6943134 tgtctctgtccccaaatcaagtgagatcatcacgaattgttcaactgtaagattcttcaaatgacaattatatcggtgacgaacacaccaactaatacta 6943233  T
Q  410 cttttcaaataaacgccattt 430  Q
    |||||||||||||| ||||||    
T  6943234 cttttcaaataaacaccattt 6943254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 101 - 430
Target Start/End: Original strand, 6935189 - 6935518
Alignment:
Q  101 tgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||||||||||||| | | ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |||    
T  6935189 tgagttttaaaatcttgttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacataat 6935288  T
Q  201 gggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttgggacattatgtagctcttcatcacaacatcgagggagcaacaa 300  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || |    ||||||||||||||||||||||||||||||||||||    
T  6935289 gggttttcttaaaatcataagaaaaatagaggcaatccatcaatccagaaagagtaggaaagccatgtagctcttcatcacaacatcgagggagcaacaa 6935388  T
Q  301 ttgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaacacaccaa 400  Q
    || |||| |||||||||||||||||||||||||||||||||| |||||||| ||  ||||||| ||||||||||||| ||||| | ||||||||||||||    
T  6935389 ttttgtacatgtctctgtccccaaatcaagtgagatcatcacgaattgttcgactgtaagattcttcaaatgacaattatatcggtaacgaacacaccaa 6935488  T
Q  401 ctaacactacttttcaaataaacgccattt 430  Q
    |||| |||||||||||||||||| ||||||    
T  6935489 ctaatactacttttcaaataaacaccattt 6935518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 423
Target Start/End: Original strand, 6947760 - 6948173
Alignment:
Q  10 attgatagcaaatatcaatgtatcaccattctcagaaaaacacattggtgtcaatcgagagcgatgaaataatgaatcattatataactcctgagtttta 109  Q
    |||||| | ||||||||||||||||||||| | ||||||||||| |||  ||||| |||   ||| | |   || | ||||||  ||||| ||| |||||    
T  6947760 attgattgtaaatatcaatgtatcaccattgttagaaaaacacagtggaatcaattgaggaggataataggttggaccattatgaaactcatgaatttta 6947859  T
Q  110 aaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttct 209  Q
    | ||| ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  6947860 atatcttttggaagattcacataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaagtgggttttct 6947959  T
Q  210 tagaatcataagaaaaatagaggcaatccatcaatacagaaagagttgggacattatgtagctcttcatcacaacatcgagggagcaacaattgtgtata 309  Q
    |  ||||||  |||||| | |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  6947960 tgaaatcatgtgaaaaacaaaggcaatccatcaacacagaaagagttggaacatcatgtagctcttcatcacaacatcgagggagcaacaaccgtgtata 6948059  T
Q  310 tgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaacacaccaactaacacta 409  Q
    | ||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| |  ||||||||||||||||| ||||    
T  6948060 tctctctgtccccaaatcaagtgagatcatcacaagttgttcaaccataagattcttcaaatgacaataatatcggtgacgaacacaccaactaatacta 6948159  T
Q  410 cttttcaaataaac 423  Q
    || |||||||||||    
T  6948160 ctattcaaataaac 6948173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 423
Target Start/End: Original strand, 6954399 - 6954812
Alignment:
Q  10 attgatagcaaatatcaatgtatcaccattctcagaaaaacacattggtgtcaatcgagagcgatgaaataatgaatcattatataactcctgagtttta 109  Q
    |||||| |||||||||||||||||||||| || ||||||||||| |||  |||||||||  | | ||||||||||||| ||||  ||||||||| |||||    
T  6954399 attgattgcaaatatcaatgtatcaccatccttagaaaaacacagtggcatcaatcgaggacaaagaaataatgaatcgttattgaactcctgactttta 6954498  T
Q  110 aaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttct 209  Q
    ||||| ||||||||| ||| | ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  6954499 aaatcttttagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgt 6954598  T
Q  210 tagaatcataagaaaaatagaggcaatccatcaatacagaaagagttgggacattatgtagctcttcatcacaacatcgagggagcaacaattgtgtata 309  Q
    |  |||||||||| ||| ||||||||||||||||||||||||||||||   ||     ||||||||||||||||||||| ||||||||||| ||||||||    
T  6954599 tgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttcatcacaacatcgggggagcaacaactgtgtata 6954698  T
Q  310 tgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaacacaccaactaacacta 409  Q
    ||||||||||| || |||||||||||| |||||||||| ||||||  ||||||| ||||||||||||||||||| |  ||| |||  |||| ||| ||||    
T  6954699 tgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgacaataatatcggtgacggacaacccaattaatacta 6954798  T
Q  410 cttttcaaataaac 423  Q
     | |||||||||||    
T  6954799 ttattcaaataaac 6954812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 348
Target Start/End: Complemental strand, 20770720 - 20770502
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 229  Q
    |||||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||| ||||||||||  ||||| |||  ||||| ||||||| |     
T  20770720 ataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaacatcatgagaaaaacaa 20770621  T
Q  230 aggcaatccatcaatacagaaagagttgggacattatgtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaa 329  Q
    |  ||||||||||| ||| |||||||| |   || | || |   ||||||||||||| ||||||| ||||| ||| | ||||||||| || |||||||||    
T  20770620 atacaatccatcaacacacaaagagtttgattatcaagtggaaattcatcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaa 20770521  T
Q  330 gtgagatcatcacaaattg 348  Q
    | ||||| |||||||||||    
T  20770520 gggagatgatcacaaattg 20770502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 17369744 - 17369675
Alignment:
Q  120 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 189  Q
    ||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  17369744 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 14749463 - 14749393
Alignment:
Q  134 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 204  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||| ||||   ||| | ||||||||||||    
T  14749463 ctaattttgaggaattgagtccaagactcttgaactccaaattccatcatcctccataaaacaaaatgggt 14749393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 24254428 - 24254506
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 210  Q
    |||| ||||| | ||||||||||||||||| ||| ||||||||||||  ||| ||||| ||||||||||| ||| ||||    
T  24254428 aactgattttgatgaattgagtccaagattgttcgactccaaattccgacatctgccatataacaaaatgagttctctt 24254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 24950272 - 24950344
Alignment:
Q  273 cttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaa 345  Q
    |||||| | ||| ||||||| ||||||||||| | ||||||||||||| | ||||||||||||| ||| ||||    
T  24950272 cttcattagaacctcgagggggcaacaattgtctgtatgtctctgtcctcgaatcaagtgagatgatcgcaaa 24950344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 6935113 - 6935171
Alignment:
Q  10 attgatagcaaatatcaatgtatcaccattctcagaaaaacacattggtgtcaatcgag 68  Q
    |||||| ||||||||||||||||||||||| | |||||| |||| |||  |||||||||    
T  6935113 attgattgcaaatatcaatgtatcaccattattagaaaagcacaatggaatcaatcgag 6935171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 24950150 - 24950214
Alignment:
Q  136 aattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||||||||||||||| ||||||| || ||||||||||| | | |||| | ||| ||||||||||    
T  24950150 aattttaaggaattgactccaagactcctcaactccaaacttcatcatcttccatataacaaaat 24950214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 58)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 1985835 - 1986264
Alignment:
Q  10 attgatagcaaatatcaatgtatcaccattctcagaaaaacacattggtgtcaatcgagagcgatgaaataatgaatcattatataactcctgagtttta 109  Q
    |||||| |||||||||||||||||||||||||| |||||| ||| ||| ||||||||||   ||| | |   || | ||||||  ||| | ||| |||||    
T  1985835 attgattgcaaatatcaatgtatcaccattctcggaaaaatacaatggagtcaatcgaggaggataataggttggaccattattgaacccatgaatttta 1985934  T
Q  110 aaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttct 209  Q
    | ||| | |||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||    
T  1985935 atatcttctagaagattcatataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggttttct 1986034  T
Q  210 tagaatcataagaaaaatagaggcaatccatcaatacagaaagagttgggacattatgtagctcttcatcacaacatcgagggagcaacaattgtgtata 309  Q
    |  ||||||||||||||||||||||||||||||| |||||||||||||| |||  |||||| |||||||||||| |||||||||||||||| ||||||||    
T  1986035 tgaaatcataagaaaaatagaggcaatccatcaacacagaaagagttggaacaccatgtagatcttcatcacaatatcgagggagcaacaactgtgtata 1986134  T
Q  310 tgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaacacaccaactaacacta 409  Q
    | ||||||||||||||||||||||||| || |||| |||||||||  ||||||| ||||||||||||| ||||| |  ||||||||||||||||| ||||    
T  1986135 tctctctgtccccaaatcaagtgagataattacaagttgttcaactgtaagattcttcaaatgacaattatatcggtgacgaacacaccaactaatacta 1986234  T
Q  410 cttttcaaataaacgccatttcgcacatac 439  Q
    || ||||||||||| ||||||| |||||||    
T  1986235 ctattcaaataaacaccatttctcacatac 1986264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 120 - 383
Target Start/End: Original strand, 15571885 - 15572163
Alignment:
Q  120 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 219  Q
    ||||||| | ||||||||||||| ||||||||  |||||| |||||||||||||| ||| |||||||||| || ||||||||||||  |||  |||||||    
T  15571885 gaagatttgaataactaattttatggaattgaacccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttcccttgaaatcata 15571984  T
Q  220 agaaaaatagaggcaatccatcaatacagaaaga------gttgg----gacatt-----atgtagctcttcatcacaacatcgagggagcaacaattgt 304  Q
    ||||||| | || |||||||| || |||||||||      ||| |    || |||     || ||  |||||||||||||||||||| |||| | |||||    
T  15571985 agaaaaacaaagacaatccataaacacagaaagataaagagtttgccaagaaatttgagaatataagtcttcatcacaacatcgaggtagcatcgattgt 15572084  T
Q  305 gtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatc 383  Q
     ||||||| ||||||||||||||||| ||||| ||||||||||||||||   ||||||| |||||||||||||||||||    
T  15572085 ctatatgtttctgtccccaaatcaagcgagattatcacaaattgttcaatcgtaagattcttcaaatgacaataatatc 15572163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 130 - 353
Target Start/End: Original strand, 13416911 - 13417146
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 229  Q
    |||||||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||| || | ||||| |||||||||| |||||||||||||| |     
T  13416911 ataactaattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccatatgataaaataggttttcttaaaatcataagaaaaacaa 13417010  T
Q  230 aggcaatccatcaatacagaaagagttgg-gacattat-----------gtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctg 317  Q
    || |||||  |||| | ||||||||| || |  | |||           |||||||||| |||||||||||||| |||||||| |||||||||||||| |    
T  13417011 agacaatcattcaacatagaaagagtaggaggaagtattggaggatcgcgtagctcttcctcacaacatcgaggtagcaacaactgtgtatatgtctcag 13417110  T
Q  318 tccccaaatcaagtgagatcatcacaaattgttcaa 353  Q
    ||||||| ||||  ||||| ||||||||||||||||    
T  13417111 tccccaactcaaccgagataatcacaaattgttcaa 13417146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 120 - 253
Target Start/End: Original strand, 18514777 - 18514910
Alignment:
Q  120 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 219  Q
    |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||| ||| ||||  |||||| |||||||  |||||||    
T  18514777 gaagattcatataactaattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcata 18514876  T
Q  220 agaaaaatagaggcaatccatcaatacagaaaga 253  Q
    ||||||| | | ||||||||| || |||||||||    
T  18514877 agaaaaacacatgcaatccattaaaacagaaaga 18514910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 14076758 - 14076677
Alignment:
Q  120 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 201  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14076758 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14076677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 14386786 - 14386705
Alignment:
Q  120 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 201  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14386786 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14386705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 14076618 - 14076542
Alignment:
Q  277 atcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 353  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  14076618 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaa 14076542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 14386646 - 14386570
Alignment:
Q  277 atcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 353  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  14386646 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaa 14386570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 248
Target Start/End: Original strand, 19344563 - 19344693
Alignment:
Q  118 tagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatca 217  Q
    ||||||||||  | ||||||||||||| |||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||| || |||||   ||      
T  19344563 tagaagattctgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaatgagtgttcttgagattg 19344662  T
Q  218 taagaaaaatagaggcaatccatcaatacag 248  Q
    | ||||||| | ||||| |||||||||||||    
T  19344663 tgagaaaaacaaaggcagtccatcaatacag 19344693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 660847 - 660916
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaa 199  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||    
T  660847 ataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 19604464 - 19604559
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 226  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |||| ||| || ||||| | | |||||| |||||||    
T  19604464 taactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataataaagtgagttttatgaaaatcatgagaaaaa 19604559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 22021455 - 22021382
Alignment:
Q  137 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 210  Q
    |||||||| ||||||||||||||||||||||||||| | ||| |||| ||||| ||||| ||||||||||||||    
T  22021455 attttaagtaattgagtccaagattcttcaactccataatccatcatctgccatataaccaaatgggttttctt 22021382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 6864807 - 6864914
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 229  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||  ||| || || ||||| ||||  ||  |||||| ||||||||||    
T  6864807 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttgtttgaaatcatgagaaaaatag 6864905  T
Q  230 aggcaatcc 238  Q
    || ||||||    
T  6864906 agacaatcc 6864914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 29867305 - 29867221
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaat 215  Q
    ||||||||| ||||||||||||||||||| |||||||| || |||| |||||||||||| |||| |||||  |||| ||||||||    
T  29867305 taactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaatcagtttccttagaat 29867221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 22028696 - 22028622
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    ||||||| ||||| |||||||||||||| |||||||||||| | ||| |||||| ||| ||||||||||||||||    
T  22028696 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 22028622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 29454103 - 29454173
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| | ||||  |||| ||||||||||    
T  29454103 ataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaat 29454173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 29881325 - 29881267
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 189  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  29881325 taactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgcca 29881267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 12819918 - 12819986
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||| |||| ||||| | ||||||||    
T  12819918 aactgattttaaggaattgagtccaggattgttcaactccaaattccgtcatctgccatacaacaaaat 12819986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 19351071 - 19351143
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 204  Q
    |||||||||| |||||| |||||||||| || ||||||||||||||| |||| ||||| | ||||||||||||    
T  19351071 aactaattttgaggaatggagtccaagactcctcaactccaaattccatcatctgccataaaacaaaatgggt 19351143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 20058057 - 20058153
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 226  Q
    ||||||||||||||| ||||||  |||||| ||||||||||  ||||||| ||||| ||| |||||||||||  ||| |||| ||||||| ||||||    
T  20058057 ataactaattttaagaaattgacaccaagactcttcaactctgaattcctccattttccatataacaaaatgactttgcttaaaatcatacgaaaaa 20058153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 20352165 - 20352089
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    ||||||||||||||  | ||||||||| || ||||||||||||||||||||||||| ||| || |||||||| ||||    
T  20352165 ataactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatattacaaaatgagttt 20352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 22063712 - 22063636
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    |||||||||||| |  || ||||||||||| |||| || ||||||||||||||||||||| ||||||||||| ||||    
T  22063712 ataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagttt 22063636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 22100563 - 22100467
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 226  Q
    |||||||||||| |  || ||||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||| ||  |||||| |||||||    
T  22100563 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaa 22100467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 29874581 - 29874517
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 194  Q
    ||||||||||||||| ||| |||||||||| |||||||| ||||||| |||||||||||| ||||    
T  29874581 ataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataa 29874517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 29921980 - 29922063
Alignment:
Q  117 ttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    ||||||||||   |||||||||| |||||||||||| |||||| |||||| | ||||||| |||||| ||||| ||||||||||    
T  29921980 ttagaagattttgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaat 29922063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 353
Target Start/End: Original strand, 18514945 - 18515031
Alignment:
Q  267 gtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 353  Q
    ||||||||| || |||| ||||||||||||| || ||||||||||||||||||  ||||||||| ||||  || ||| |||||||||    
T  18514945 gtagctctttattacaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgagacaataacatattgttcaa 18515031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 9807871 - 9807814
Alignment:
Q  153 tccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 210  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||| |||| |||||||||    
T  9807871 tccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttttctt 9807814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 18952906 - 18952979
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 204  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18952906 taactaattttaaggaactgagtccatgacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18952979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 18982953 - 18983026
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 204  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18982953 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18983026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 18997599 - 18997672
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 204  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18997599 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18997672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 20338993 - 20338917
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtttt 207  Q
    ||||| |||| || || |||||||||||| ||||||||||| ||||||||||||| ||| || |||||||| |||||    
T  20338993 taactgatttgaaagagttgagtccaagaatcttcaactcctaattccttcattttccatattacaaaatgagtttt 20338917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 24385119 - 24385051
Alignment:
Q  273 cttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatca 341  Q
    |||||||| ||| | ||||| ||||||||||||| ||| ||||||||||||||| ||||||||| ||||    
T  24385119 cttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaattaagtgagatgatca 24385051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 22070189 - 22070110
Alignment:
Q  122 agattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 201  Q
    |||||| ||||||||||||| |  ||  |||||||||| |||| ||||||||||| |||||||||||| |||| ||||||    
T  22070189 agattcttataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatg 22070110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 24391316 - 24391269
Alignment:
Q  289 agggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagat 336  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  24391316 agggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagat 24391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 36263119 - 36263028
Alignment:
Q  134 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaa 225  Q
    |||| ||||| || |||||||||||| ||||||||||||||||| | ||| | ||| ||||||||||  ||||||||| | |||| ||||||    
T  36263119 ctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttatagtcattagaaaa 36263028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 19325987 - 19326065
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 210  Q
    |||| ||||| | ||||||||||||||||| ||| ||||||||||||  ||| ||||| ||||||||||| ||| ||||    
T  19325987 aactgattttgatgaattgagtccaagattgttctactccaaattccgacatatgccatataacaaaatgagttctctt 19326065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 19637217 - 19637287
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||||||||||||||||   || |||| || |||| |||||||||||||||||||||||| |||| |||||    
T  19637217 ataactaattttaaggagccgaatccacgactcttgaactccaaattccttcatttgccatataataaaat 19637287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 20374493 - 20374579
Alignment:
Q  120 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    |||||||  |||||||||||||||  | |||| |||| || ||| ||||||||||||||||||||| ||| || |||||||| ||||    
T  20374493 gaagattattataactaattttaaaaagttgaatccatgaatctccaactccaaattccttcatttcccatattacaaaatgagttt 20374579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 29859524 - 29859454
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    ||||||||||||||| ||| | |||||||| |||||||||||||||| |||||| | ||| ||||| ||||    
T  29859524 ataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaat 29859454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 29106883 - 29106814
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||||||||||||  | |||||||||||| |||||||| ||||||| |||||| ||||| | ||||||||    
T  29106883 taactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaat 29106814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 29431001 - 29431086
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaat 215  Q
    ||||||||||||||||||||| |||||||| |||| | | ||||||| | ||||  |||| |||||||||| ||| | ||||||||    
T  29431001 ataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaaataggtgtccttagaat 29431086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 29445663 - 29445732
Alignment:
Q  137 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    ||||| || |||||||||||||| |||||||| || ||||||||||| ||||| |||| ||||| |||||    
T  29445663 atttttagaaattgagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggttt 29445732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 15444018 - 15443922
Alignment:
Q  146 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatca 242  Q
    |||||||||||||| |||||||||||| | |||||||| ||||| | ||||||    ||| | || ||||||||||||||| | || ||||||||||    
T  15444018 aattgagtccaagactcttcaactccatactccttcatatgccataaaacaaatccagttgtattggaatcataagaaaaacaaagacaatccatca 15443922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 19357978 - 19357906
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 204  Q
    |||||||||| | ||||||||||||||| |||| ||||||||||||| |||| | ||| | ||| ||||||||    
T  19357978 aactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccataaaacgaaatgggt 19357906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 19722086 - 19722018
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||| ||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| | ||||||||    
T  19722086 aactgattttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaaat 19722018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 22080918 - 22080862
Alignment:
Q  150 gagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    |||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||    
T  22080918 gagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttt 22080862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 29899442 - 29899374
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||||||||| |  ||||||||||| || |||||||| ||||||| |||||| ||||| ||||||||||    
T  29899442 aactaatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaat 29899374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 19645630 - 19645689
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 189  Q
    ||||||||||||||| ||  ||||||| || ||||||| ||||||||||||||| |||||    
T  19645630 ataactaattttaagtaacagagtccatgactcttcaattccaaattccttcatctgcca 19645689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 36260319 - 36260228
Alignment:
Q  134 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaa 225  Q
    ||||||||||  | |||| ||||||| ||||||||||||||||| | ||| | ||| ||||||||||  ||||||||  |||||| ||||||    
T  36260319 ctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttgtaatcattagaaaa 36260228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 13888098 - 13888172
Alignment:
Q  134 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttc 208  Q
    |||| ||||||||||||||||||||| | |||  |||||||||   |||||| ||| |||||||||| |||||||    
T  13888098 ctaaatttaaggaattgagtccaagacttttcgtctccaaattttgtcattttccatataacaaaattggttttc 13888172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 362
Target Start/End: Original strand, 16839559 - 16839613
Alignment:
Q  308 tatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagat 362  Q
    |||||||| || |||||||||||||| || ||||||||||| |||||| ||||||    
T  16839559 tatgtctccgtgcccaaatcaagtgaaataatcacaaattgctcaacagtaagat 16839613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 19374824 - 19374778
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattcc 178  Q
    ||||||||||||| ||||||||||||||   ||||||||||||||||    
T  19374824 aactaattttaagaaattgagtccaagaccgttcaactccaaattcc 19374778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 21218712 - 21218778
Alignment:
Q  134 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||| ||| ||||||||||||||||| |  ||| ||||||||||| |||||||||| ||||| ||||    
T  21218712 ctaaatttgaggaattgagtccaagacttatcatctccaaattccgtcatttgccatataaccaaat 21218778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 24002279 - 24002201
Alignment:
Q  120 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 198  Q
    ||||||||  ||||||||| ||||| |||||||||||||| |||| ||||||  | |||||||| ||||| | ||||||    
T  24002279 gaagattctgataactaatcttaagtaattgagtccaagactcttgaactccgtactccttcatatgccataaaacaaa 24002201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 26256829 - 26256732
Alignment:
Q  146 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 243  Q
    |||||||||||||| |||| ||||||| | |||||||| ||||| | ||||||||   ||| ||| | ||||| ||||||| | ||||| ||||||||    
T  26256829 aattgagtccaagactcttgaactccatactccttcatctgccataaaacaaaatcattttccttggtatcatgagaaaaacaaaggcattccatcaa 26256732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 15508800 - 15508704
Alignment:
Q  146 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatca 242  Q
    |||||||||| ||| | |||||||||| | |||||||| ||||| | ||||||    ||||| || ||||||||||||||| | || ||||||||||    
T  15508800 aattgagtcctagactattcaactccatactccttcatatgccaaaaaacaaatccagttttattggaatcataagaaaaacaaagacaatccatca 15508704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 20133340 - 20133376
Alignment:
Q  153 tccaagattcttcaactccaaattccttcatttgcca 189  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  20133340 tccaagaatcttcaactccaaattctttcatttgcca 20133376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 20140841 - 20140877
Alignment:
Q  153 tccaagattcttcaactccaaattccttcatttgcca 189  Q
    ||||||| | |||||||||||||||||||||||||||    
T  20140841 tccaagaattttcaactccaaattccttcatttgcca 20140877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 121 - 243
Target Start/End: Complemental strand, 53774919 - 53774797
Alignment:
Q  121 aagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataa 220  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||  ||| ||||||||    
T  53774919 aagattctgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataa 53774820  T
Q  221 gaaaaatagaggcaatccatcaa 243  Q
    |||||| | |  |||||||||||    
T  53774819 gaaaaacaaatacaatccatcaa 53774797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 3565814 - 3565701
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 229  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| |||||||||| ||  |||||||||| |     
T  3565814 ataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaataagaaaaacaa 3565715  T
Q  230 aggcaatccatcaa 243  Q
    ||||| ||| ||||    
T  3565714 aggcagtccctcaa 3565701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 11970982 - 11971058
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    |||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  11970982 ataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagttt 11971058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 3557796 - 3557720
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| |||||    
T  3557796 ataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggttt 3557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 11981683 - 11981759
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    ||||||||||||||| ||| ||||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  11981683 ataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagttt 11981759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 3560958 - 3561066
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 229  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||  ||||| ||||| |||| ||||| ||||| |||  ||  |||||||||| |     
T  3560958 ataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttccttgtaagaataagaaaaacaa 3561057  T
Q  230 aggcaatcc 238  Q
    |||||||||    
T  3561058 aggcaatcc 3561066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 8443454 - 8443567
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 229  Q
    ||||||||||||||  |||||| ||||||| || | ||||||||| |||||||| ||||| |||||| |||| ||| ||||  |||||||||||||| |     
T  8443454 ataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataacataatgagttctcttgaaatcataagaaaaacaa 8443553  T
Q  230 aggcaatccatcaa 243  Q
    || || ||||||||    
T  8443554 agacagtccatcaa 8443567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 837842 - 837769
Alignment:
Q  134 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtttt 207  Q
    ||||||||||  |||||| ||||||| |||| ||| ||||| | |||||||||||| |||||||||||||||||    
T  837842 ctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatgggtttt 837769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 35767083 - 35767017
Alignment:
Q  135 taattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 201  Q
    |||||||||||| |||| ||||||| ||||||||||||||||| | ||| | ||| |||||||||||    
T  35767083 taattttaaggagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatg 35767017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 6372516 - 6372439
Alignment:
Q  129 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    ||||||||||||||   |||||| || |||| |||| ||||||| | |||||||||||||| |||| |||||||||||    
T  6372516 tataactaattttatataattgaatctaagactcttgaactccagaatccttcatttgccatataataaaatgggttt 6372439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 53430100 - 53430169
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    ||||||||||||||||||||||||||||| |||||  | ||| ||| |||||| ||||| || |||||||    
T  53430100 taactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatatgacaaaat 53430169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 53774750 - 53774701
Alignment:
Q  302 tgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttc 351  Q
    |||||||||||||||||| |||||||||| || || ||||||||||||||    
T  53774750 tgtgtatatgtctctgtctccaaatcaagcgaaataatcacaaattgttc 53774701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 1686285 - 1686349
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 194  Q
    |||||||  |||||| |||||||||||||| || ||||| |||||||||||||| ||||| ||||    
T  1686285 ataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcatctgccatataa 1686349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 6392893 - 6392815
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca---gataacaaaatgggttt 206  Q
    |||||||||||||  |||||| ||||||| || | ||||||||| ||||||||||||||   ||| |||||||||||||    
T  6392893 taactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgccatatgatgacaaaatgggttt 6392815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 53790621 - 53790577
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaatt 176  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||    
T  53790621 aactaattttaagaaattgagtccaagattgttcaaatccaaatt 53790577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 6113149 - 6113090
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 189  Q
    ||||||||||  |||||| ||||||||||| |||| ||||||||||||| ||||| ||||    
T  6113149 ataactaattcgaaggaactgagtccaagactctttaactccaaattccatcattcgcca 6113090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 10475239 - 10475164
Alignment:
Q  168 ctccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 243  Q
    ||||||| |||||||||||||| |||||||||||||| || |   |||||||| ||||| | || |||||||||||    
T  10475239 ctccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10475164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 10464299 - 10464226
Alignment:
Q  170 ccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 243  Q
    ||||| |||||||||||||| |||||||||||||| || |   |||||||| ||||| | || |||||||||||    
T  10464299 ccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10464226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 10468118 - 10468042
Alignment:
Q  124 attcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||| ||||| |||||||||  |||||| |||||||    | ||||||||| |||||||||||||| ||||||||||    
T  10468118 attcttataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaat 10468042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 14514980 - 14514874
Alignment:
Q  120 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 219  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||| ||||||| ||||||||||||  |||||||    
T  14514980 gaagattcatataactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaagatgggttttcttgaaatcata 14514881  T
Q  220 agaaaaa 226  Q
    |||||||    
T  14514880 agaaaaa 14514874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 18908811 - 18908885
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||||||    
T  18908811 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18908885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 18920767 - 18920841
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||||||    
T  18920767 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18920841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 18913559 - 18913632
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 205  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| |||||||||||||||    
T  18913559 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtt 18913632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 554546 - 554471
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 205  Q
    ||||||||||||||| |||||||||||||| |||| ||||||| ||||  |||||||||| |||| || |||||||    
T  554546 ataactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataataagatgggtt 554471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 20975612 - 20975557
Alignment:
Q  146 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 201  Q
    |||||| ||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  20975612 aattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaatg 20975557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 20712691 - 20712756
Alignment:
Q  288 gagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 353  Q
    |||||||||||| |||||| ||||||||  |||||||||| || ||||| ||||||||||||||||    
T  20712691 gagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaattgttcaa 20712756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 25698561 - 25698507
Alignment:
Q  146 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||| ||||||||| |||||||||||||||||  |||||||||| ||||||||||    
T  25698561 aatttagtccaagagtcttcaactccaaattctctcatttgccatataacaaaat 25698507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 353
Target Start/End: Complemental strand, 14514795 - 14514730
Alignment:
Q  288 gagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 353  Q
    |||||||||| || ||||||||||||||||||| ||||||||| ||||  |  |||||||||||||    
T  14514795 gagggagcaagaactgtgtatatgtctctgtcctcaaatcaagcgagacaaaaacaaattgttcaa 14514730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 20967602 - 20967545
Alignment:
Q  298 caattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaaca 355  Q
    ||||||||| || |||||||||||||||||||| || || ||||||||||| ||||||    
T  20967602 caattgtgtgtaggtctctgtccccaaatcaagggaaatgatcacaaattgctcaaca 20967545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 25377144 - 25377072
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 202  Q
    ||||||||||||||  |||||| ||||||| |||| ||||||||| ||||||||   ||| ||||||||||||    
T  25377144 ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatgg 25377072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 20699621 - 20699663
Alignment:
Q  311 gtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 353  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||    
T  20699621 gtctctgttcccaaatcaagtgagataatcacaaattgatcaa 20699663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 120 - 353
Target Start/End: Original strand, 18964820 - 18965056
Alignment:
Q  120 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 219  Q
    ||||||||  ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||| ||||| | |  |||||     
T  18964820 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaagatcatg 18964919  T
Q  220 agaaaaatagaggcaatccatcaatacagaaagagttgggacatta---tgtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctct 316  Q
    || |||| | ||||||| |||||||||| |||| || ||   || |    || ||   |||||||||||| ||||||| ||||| |||||| |||||||     
T  18964920 agtaaaacaaaggcaattcatcaatacacaaagggtcggagtatcaagcggttgcaactcatcacaacatggagggagtaacaactgtgtaaatgtctcc 18965019  T
Q  317 gtccccaaatcaagtgagatcatcacaaattgttcaa 353  Q
     |||||| |||||||||||| ||||||||||| ||||    
T  18965020 atccccagatcaagtgagataatcacaaattgctcaa 18965056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 29647744 - 29647633
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagag 231  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||||||||| |||||||||  ||  | ||||||| | ||    
T  29647744 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttttcttaagatggtgagaaaaacaaag 29647645  T
Q  232 gcaatccatcaa 243  Q
    ||||||||||||    
T  29647644 gcaatccatcaa 29647633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 29597554 - 29597628
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    |||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||||||||| ||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagttt 29597628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 29642427 - 29642348
Alignment:
Q  132 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctta 211  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||| ||||| |||||||||    
T  29642427 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctta 29642348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 24330900 - 24330975
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    ||||||| |||||||| |||||||||||| |||||||| |||||||||||||| | ||| |||||||||| |||||    
T  24330900 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 24330975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 23086833 - 23086784
Alignment:
Q  149 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 198  Q
    ||||||||||| |||| ||||||||| |||||||| ||||| ||||||||    
T  23086833 tgagtccaagactcttgaactccaaactccttcatctgccatataacaaa 23086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 28763912 - 28763980
Alignment:
Q  137 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 205  Q
    ||||| |||||| || ||||||| | |||||||||||||| | |||| | ||| |||||||||||||||    
T  28763912 attttgaggaatcgactccaagacttttcaactccaaattgcgtcatcttccatataacaaaatgggtt 28763980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 4570998 - 4570927
Alignment:
Q  129 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||    
T  4570998 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 4570927  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 50645484 - 50645556
Alignment:
Q  129 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 201  Q
    |||||||||||||||  |||||| ||||||| |||| ||||||||| |||||||||||||| |||||||||||    
T  50645484 tataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatg 50645556  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 21855384 - 21855459
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    ||||||| |||||||| |||||||||||| |||||||| |||||||||||||| | ||| |||||||||| |||||    
T  21855384 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 21855459  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 4014966 - 4015032
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaa 197  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||| |||||| ||||| |||||||    
T  4014966 taactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaa 4015032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 39379061 - 39379131
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||||| |||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| |||||    
T  39379061 ataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaat 39379131  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 10219054 - 10218985
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    |||||||||||||| |||||||||||||| |||||||  ||||||| |||||||||||| | ||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaat 10218985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 15961298 - 15961233
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataac 195  Q
    |||| ||| ||||| |||||||||||||||||||||| ||||||||| |||||||| ||| |||||    
T  15961298 ataattaactttaaagaattgagtccaagattcttcagctccaaatttcttcattttccatataac 15961233  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 17560772 - 17560843
Alignment:
Q  129 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 200  Q
    ||||||||||| |||||||| | |||||||| |||||||| ||||||| |||||| ||||| ||||| ||||    
T  17560772 tataactaattataaggaatggtgtccaagaatcttcaaccccaaatttcttcatgtgccatataaccaaat 17560843  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 4016773 - 4016835
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagata 193  Q
    ||||||| |||||  || |||||||| || |||||||||||||||| |||||| |||||||||    
T  4016773 taactaaatttaaacaactgagtccaggaatcttcaactccaaatttcttcatctgccagata 4016835  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 3625804 - 3625740
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 194  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| ||||    
T  3625804 ataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataa 3625740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 25901279 - 25901351
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 202  Q
    |||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  25901279 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25901351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 25915297 - 25915369
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 202  Q
    |||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  25915297 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25915369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 3837960 - 3837904
Alignment:
Q  149 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 205  Q
    ||||||||||| |||| ||||||||| || ||||||| ||| | |||||||||||||    
T  3837960 tgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 3837904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 7543 - 7474
Alignment:
Q  120 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 189  Q
    ||||||||  ||| ||||||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  7543 gaagattccgatagctaattttaaggaattgaacccaagactcatcaactccaaattccttcatttgcca 7474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 7643 - 7607
Alignment:
Q  17 gcaaatatcaatgtatcaccattctcagaaaaacaca 53  Q
    |||||||||||||||||||||||||| |||| |||||    
T  7643 gcaaatatcaatgtatcaccattctcggaaacacaca 7607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 4669 - 4765
Alignment:
Q  130 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 226  Q
    |||||||||||| |  || ||||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||| ||  |||||| |||||||    
T  4669 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaa 4765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 27618571 - 27618473
Alignment:
Q  120 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcat 218  Q
    ||||||||  |||||||| |||||| || ||||||||||| ||||||||||| | ||| | ||||| ||| ||||||||||| |||| |||| ||||||    
T  27618571 gaagattctgataactaactttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagtttgcttaaaatcat 27618473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 29390340 - 29390288
Alignment:
Q  146 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 198  Q
    |||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||    
T  29390340 aatttagttcaagattcttcaactccaaattccctcatctgccatataacaaa 29390288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 42846461 - 42846501
Alignment:
Q  166 aactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  42846461 aactccaaaatccttcatttgccaaataacaaaatgggttt 42846501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 11338592 - 11338644
Alignment:
Q  146 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 198  Q
    ||||||| ||||||||||| || |||||| || ||||||||||| ||||||||    
T  11338592 aattgagaccaagattcttgaaatccaaactctttcatttgccatataacaaa 11338644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 11339435 - 11339487
Alignment:
Q  146 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 198  Q
    ||||||||||||||||||| || |||||| ||  |||||||||| ||||||||    
T  11339435 aattgagtccaagattcttgaaatccaaactcgctcatttgccatataacaaa 11339487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 11345117 - 11345169
Alignment:
Q  146 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 198  Q
    ||||||||||||||||||| || |||||| || | ||||||||| ||||||||    
T  11345117 aattgagtccaagattcttgaaatccaaactcttccatttgccatataacaaa 11345169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 29157117 - 29157073
Alignment:
Q  131 taactaattttaaggaattgagtccaagattcttcaactccaaat 175  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  29157117 taactaattttaaggagttgagtccatggctcttcaactccaaat 29157073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 16530 - 16595
Alignment:
Q  288 gagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 353  Q
    |||||||||||| |||||| ||||||||  |||||||||| || ||||| ||||||||||||||||    
T  16530 gagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaattgttcaa 16595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 13737 - 13806
Alignment:
Q  137 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    |||||||| || |||||||||||||| |||  ||| ||||||||||| ||||| |||| ||||| |||||    
T  13737 attttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggttt 13806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 22572 - 22641
Alignment:
Q  137 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 206  Q
    |||||||| || |||||||||||||| |||  ||| ||||||||||| ||||| |||| ||||| |||||    
T  22572 attttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggttt 22641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 13441 - 13385
Alignment:
Q  149 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 205  Q
    ||||||||||| |||| ||||||||| || ||||||| ||| | |||||||||||||    
T  13441 tgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 13385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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