View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5693-Insertion-7 (Length: 400)
Name: NF5693-Insertion-7
Description: NF5693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5693-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 6889928 - 6889786
Alignment:
| Q |
7 |
atgtatatggccaccaattatcatattcttgtagcttttgtagaagagagtttaggtcagcacaagcattaggtggacatatgaatgttcatagaaaaga |
106 |
Q |
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| T |
6889928 |
atgtatatggccaccaag-atcatattcttgtagcttttgtagaagagagtttaggtcagcacaagcattaggtggacatatgaatgttcatagaaaaga |
6889830 |
T |
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| Q |
107 |
tagagcaagactcaaacaacaaccacaaaatgatcaaattcttt |
150 |
Q |
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| T |
6889829 |
tagagcaagactcaaacaacaaccacaaaatgatcaaattcttt |
6889786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 250 - 400
Target Start/End: Complemental strand, 6889650 - 6889500
Alignment:
| Q |
250 |
ctaaccctaattctcatcttgatcatttcgtatcttcaacttcatcgccttcattagcttctaaggctttattcggagatgaaaccctaatttctccttt |
349 |
Q |
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| T |
6889650 |
ctaaccctaattctcatcttgatcattttgtatcttcaacttcatccccttcgtcggcttctaaggctttattcggagatgaaaccctaatttctccttt |
6889551 |
T |
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| Q |
350 |
caactcttctgaatcatggctgaatttacctggaaatgatatattatgttc |
400 |
Q |
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| T |
6889550 |
caactcttctgaatcatggctgaatttacctggaaatgatatattatgttc |
6889500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 6889757 - 6889683
Alignment:
| Q |
179 |
cgagcttgaaatcgcgactcatcatgttcaaaatccacttattcaaaatgtttataataatgacctattccctaa |
253 |
Q |
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| T |
6889757 |
cgagcttgaaatcgcgactcatcatgttcaaaatccacttattcaaaatgtttataataataacctattccctaa |
6889683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 30978585 - 30978499
Alignment:
| Q |
30 |
tattcttgtagcttttgtagaagagagtttaggtcagcacaagcattaggtggacatatgaatgttcatagaaaagatagagcaaga |
116 |
Q |
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| T |
30978585 |
tattcttgtagtttttgcaaaagagagtttaggtcagctcaagctttaggtggacatatgaatgtccatagaagagatagggcaaga |
30978499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 30956703 - 30956658
Alignment:
| Q |
69 |
caagcattaggtggacatatgaatgttcatagaaaagatagagcaa |
114 |
Q |
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| T |
30956703 |
caagctttaggtggacacatgaacattcatagaaaagatagagcaa |
30956658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 30726686 - 30726606
Alignment:
| Q |
45 |
tgtagaagagagtttaggtcagcacaagcattaggtggacatatgaatgttcatagaaaagatagagcaagactcaaacaa |
125 |
Q |
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| T |
30726686 |
tgtaaaagagagtttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagctaagctcaaacaa |
30726606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 34522600 - 34522695
Alignment:
| Q |
30 |
tattcttgtagcttttgtagaagagagtttaggtcagcacaagcattaggtggacatatgaatgttcatagaaaagatagagcaagactcaaacaa |
125 |
Q |
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| T |
34522600 |
tattcatgtaacttttgtaaaagagagtttaggtctgctcaagctcttggtggtcacatgaatattcataggagagatagagctaggctcaaacaa |
34522695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 31844600 - 31844521
Alignment:
| Q |
36 |
tgtagcttttgtagaagagagtttaggtcagcacaagcattaggtggacatatgaatgttcatagaaaagatagagcaag |
115 |
Q |
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| T |
31844600 |
tgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagcaag |
31844521 |
T |
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