View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5693_high_4 (Length: 223)

Name: NF5693_high_4
Description: NF5693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5693_high_4
NF5693_high_4
[»] chr5 (7 HSPs)
chr5 (18-209)||(1505232-1505423)
chr5 (18-208)||(1478255-1478445)
chr5 (18-208)||(1482449-1482639)
chr5 (18-209)||(1492423-1492614)
chr5 (18-199)||(1509389-1509570)
chr5 (18-209)||(1499495-1499686)
chr5 (18-128)||(1487006-1487116)
[»] chr1 (3 HSPs)
chr1 (18-209)||(44141456-44141647)
chr1 (18-209)||(44128829-44129020)
chr1 (18-209)||(44133034-44133225)
[»] chr7 (6 HSPs)
chr7 (18-209)||(46706664-46706855)
chr7 (18-209)||(5289373-5289564)
chr7 (18-209)||(5302751-5302942)
chr7 (18-209)||(5310652-5310843)
chr7 (18-209)||(5315366-5315557)
chr7 (18-209)||(5284563-5284754)
[»] chr2 (1 HSPs)
chr2 (18-209)||(24163466-24163657)
[»] chr3 (1 HSPs)
chr3 (18-209)||(37863066-37863257)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 1505423 - 1505232
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
1505423 gtttgtgcagtccaaaccatttcaaatataggtttctcaatttctggtattggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 1505324  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1505323 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 1505232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 1478445 - 1478255
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||| ||| || ||||||||||| ||||||||||| |||||||||||||| ||||    
1478445 gtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtattgggtcagaaccaacaatgagtgcagcagcaccatctccaaatagtgctt 1478346  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcaccttt 208  Q
    |||||||||| |||||||| |||||||||||||| || || ||||| |||||||| ||||| ||||| |||||||||||||| ||||||||    
1478345 gtccaacaagactgtccaaatgagtatcactaggaccacggaatgtcactgcagtaacttcagaacaaacaaccaacacacgagcaccttt 1478255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 1482639 - 1482449
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||| || ||||    
1482639 gtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtattgggtcagaaccaacaatgagtgcagcagctccatctccaaagagtgctt 1482540  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcaccttt 208  Q
    |||||||||| |||||||| |||||||||||||| || || ||||| |||||||| ||||| ||||| |||||||||||||| ||||||||    
1482539 gtccaacaagactgtccaaatgagtatcactaggaccacggaatgtcactgcagtaacttcagaacaaacaaccaacacacgagcaccttt 1482449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 1492614 - 1492423
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||| ||||||| ||| ||||||||| |||| |||||||||||||| ||||| || |||||||| |||||||| ||||||||||||||||| ||||    
1492614 gtttgtgctgtccaaatcatctcaaatataggtttttcaatttctggtaccggatcagacccaacaataagtgcagctgctccatctccaaatagtgctt 1492515  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    |||||||||| ||||||||||| |||||||| || || ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||    
1492514 gtccaacaagactgtccaagtgtgtatcactgggaccacgaaatgtgactgcagtgacttcagaacaaacaactaacacacgagcacctttg 1492423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 1509570 - 1509389
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||||||||||||||| |||||||||  |||||||||||||||||| || || | ||||||||| |||||||||||||||||||||||||  ||||    
1509570 gtttgtgcagtccaaaccatctcaaatatagatttctcaatttctggtacagggtcagtaccaacaatgagtgcagcagctccatctccaaataatgctt 1509471  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacg 199  Q
    |||||||||| |||||||| |||||||||| |||||| | ||||||||||||| ||||||  ||||| ||||||||||||||    
1509470 gtccaacaagactgtccaaatgagtatcaccagggccacaaaatgtgactgcaatgactttagaacaaacaaccaacacacg 1509389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 1499686 - 1499495
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    ||||||||||||||||| |  ||||||| | ||||||||||||| |||||| | || || |||||||| | ||| |||||||||||||||||||  ||||    
1499686 gtttgtgcagtccaaactaactcaaataaaggtttctcaatttcaggtactaggtcagagccaacaatgactgccgcagctccatctccaaatattgctt 1499587  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    ||||||||||  |||  | |||||||| |||||| || | ||||| || |||||||| ||| ||||| |||||||||||||| |||||||||    
1499586 gtccaacaagtttgtgtaggtgagtattactaggtccacaaaatgagattgcagtgatttcagaacaaacaaccaacacacgagcacctttg 1499495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 1487116 - 1487006
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    ||||||||||||||||| |  ||||| | | |||||||||||| || ||  ||||| || |||||||| | | || |||||||||| |||||||  ||||    
1487116 gtttgtgcagtccaaacaagctcaaagagaggtttctcaatttttgatatcggatcggagccaacaatgactacaacagctccatcaccaaataatgctt 1487017  T
118 gtccaacaagg 128  Q
    |||||||||||    
1487016 gtccaacaagg 1487006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 44141647 - 44141456
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
44141647 gtttgtgcagtccaaaccatctcaaatattggtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagtgctt 44141548  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
44141547 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcagaacagacaaccaacacacgagcacctttg 44141456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 44129020 - 44128829
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
44129020 gtttgtgcagtccaaaccatctcaaatattggtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagggcct 44128921  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
44128920 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcagaacagacaaccaacacacgagcacctttg 44128829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 44133225 - 44133034
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
44133225 gtttgtgcagtccaaaccatctcaaatattggtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagggcct 44133126  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
44133125 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcagaacagacaaccaacacacgagcacctttg 44133034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 46706664 - 46706855
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||   ||||||| || ||||    
46706664 gtttgtgaagtccaaaccatctcaaatataggtttctcaatttctggtactggatcagaaccaacaataagtgcagcagctctgactccaaacagtgctt 46706763  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||    
46706764 gcccaacaaggctgtccaagtgagtatcactagggccgcggaatgtgactgcagtgacttcagaacaaacaaccaatacacgggcacctttg 46706855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 5289373 - 5289564
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||| || ||||    
5289373 gtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaataagagcagcagctccatctccaaacagtgctt 5289472  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    | ||||||||||||||||||||||||||||| ||||| || |||||||| || |||||||| ||||| |||||||||||||| |||||||||    
5289473 gcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttg 5289564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 5302942 - 5302751
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| || || || |||||||| || ||||||||||||||||||||||| ||||    
5302942 gtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtacggggtcagagccaacaataagagcagcagctccatctccaaatagtgctt 5302843  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||| || ||||| |||||||||||||| |||||||||    
5302842 gtccaacaagactgtccaagtgagtatcactagggccacgaaatgtgacagcggtgacctctgaacatacaaccaacacacgagcacctttg 5302751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 5310843 - 5310652
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||| |  ||||    
5310843 gtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaataagagcagcagctccatctccaaacaatgctt 5310744  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    | ||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||| ||||| |||||||||||||| |||||||||    
5310743 gcccaacaaggctgtccaagtgagtatcactggggccacgaaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttg 5310652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 5315557 - 5315366
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||||||||||||||| ||||||||| ||||||| |||||||||||||| || || |||||||| || ||||| ||||||||||||||||| ||||    
5315557 gtttgtgcagtccaaaccatctcaaatataggtttctctatttctggtactgggtcagagccaacaataagagcagccgctccatctccaaatagtgctt 5315458  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    |||||||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| ||||| |||||||||||||| |||||||||    
5315457 gtccaacaaggctgtctaagtgagtatcactaggaccacgaaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttg 5315366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 5284754 - 5284563
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||| ||| || || |||||||| || ||||||||||||||||||||||| ||||    
5284754 gtttgtgcagtccaaaccatctcaaatataggtctctcaatttctggtattgggtcagagccaacaataagagcagcagctccatctccaaatagtgctt 5284655  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    |||||||||| ||||| ||||||||||| |||||||| ||||||||||| || |||||||| ||||| |||||||||||||| |||||||||    
5284654 gtccaacaagactgtctaagtgagtatcgctagggccacgaaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttg 5284563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 24163466 - 24163657
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    |||||||| |||||||| |  ||||||| | |||||||||||||  ||| ||| || || |||||||| | |||||||||||||||||||||||||||||    
24163466 gtttgtgctgtccaaactaactcaaatagaggtttctcaatttcctgtattgggtcagagccaacaatgactgcagcagctccatctccaaatagagctt 24163565  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    ||||||||||| |||| ||||||||||| || || || | |||||||| ||| || ||||| ||||| |||||||||||||| | |||||||    
24163566 gtccaacaaggttgtctaagtgagtatcgcttggtccacaaaatgtgattgcggtaacttcagaacaaacaaccaacacacgagaacctttg 24163657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 37863066 - 37863257
Alignment:
18 gtttgtgcagtccaaaccatttcaaatataagtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagagctt 117  Q
    ||||||||||||||||||| |||||| | | | ||||||| |||||| |  ||||||||||||||||| |  || || || ||||||||||| |  || |    
37863066 gtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatgcct 37863165  T
118 gtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttg 209  Q
    | || ||||| || || |  |||||||||||||| || || || || ||||||||||  || ||||| || ||||| ||||| || ||||||    
37863166 gccccacaagactatcaagatgagtatcactaggtccacggaaagtaactgcagtgatctccgaacaaaccaccaaaacacgagcgcctttg 37863257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University