View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5693_low_2 (Length: 379)
Name: NF5693_low_2
Description: NF5693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5693_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 4635979 - 4635619
Alignment:
| Q |
18 |
gtttaaactctagaacaccatgaacactcaaacatttcttgaaaaaactttgcacaatatgttctatgatttctagtttaatgtaataaaatgaaaacta |
117 |
Q |
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| T |
4635979 |
gtttaaactctagaacatcatgaacactcaaacattttttgaaaaaactttgcataatatgttctatgatttctagtttaatgtaataaaattaaaacta |
4635880 |
T |
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| Q |
118 |
atgcttgtttaccaaaaacacatgtaaacaagcgccgaatatgcgcaaatcacttataagatcctagttgaataattgaaatcataacacacaacatgcc |
217 |
Q |
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| T |
4635879 |
acgtttgtttaccaaaaacacatgtaaacaaacgccgaatatgtgcaaatcacgtataagatcctagttgaataattgaaatcataacacacaacatgcc |
4635780 |
T |
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| Q |
218 |
aactgtatgaatgattnnnnnnntggaaatgcatttgattggaggattattacttgatcctccttatatttcttgtccataatataattgattgtgcaca |
317 |
Q |
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| T |
4635779 |
aactgtatgaacgattaaaaaaatggaaatgcttttgattggaggattattacttgatcctccttgtatttcttgtccataatataattgattgtgcaca |
4635680 |
T |
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| Q |
318 |
gtttttaacatttgtaaactaatcaaaaataaaaactcaatccatattaacattaaaatat |
378 |
Q |
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| T |
4635679 |
gtttttaacatttgtaaactaataaaaaataaaaactcaatccatattaacattaaaatat |
4635619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 4642200 - 4642048
Alignment:
| Q |
18 |
gtttaaactctagaacaccatgaacactcaaacatttcttgaaaaaactttgcacaatatgttctatgatttctagtttaatgtaataaaatgaaaacta |
117 |
Q |
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| T |
4642200 |
gtttaaactcaagaacaccataagcactcaaacatttttggaaaaacttttgcacagtatgttggacgatttctattttgatgtaataaaattaaaatta |
4642101 |
T |
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| Q |
118 |
atgcttgtttaccaaaaacacatgtaaacaagcgccgaatatgcgcaaatcac |
170 |
Q |
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| T |
4642100 |
aagtttgtttaccaaaagcaccggtaaacaaacactgaatatgtgcagatcac |
4642048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 4631514 - 4631423
Alignment:
| Q |
288 |
tcttgtccataatataattgattgtgcacagtttttaacatttgtaaactaatcaaaaataa-aaactcaatccatattaacattaaaatat |
378 |
Q |
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| T |
4631514 |
tcttgtccataatataattgaatgtgcacagtttctaaccttcgtaaattaataaaaaataagatactcgatccatattaacattaaaatat |
4631423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 4631846 - 4631645
Alignment:
| Q |
18 |
gtttaaactctagaacaccatgaacactcaaacatttcttgaaaaaactttgcacaatatgttctatgatttctagtttaat-------gtaataaaatg |
110 |
Q |
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| T |
4631846 |
gtttaaactcaaaaacaccataaacagtcaaatattttatgcaaaacttttgcacaatatgttttatgatttctagtttgattttataagttataaaatt |
4631747 |
T |
|
| Q |
111 |
aaaactaatgcttgtttaccaaaaacacatgtaaacaagcgccgaatatgcgcaaatcacttataagatcctagttgaataattgaaatcataacacaca |
210 |
Q |
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|||||||| | ||||||| |||||||| ||| || || |||| ||| |||||||| |||| || ||||||||||||||||||||||| |||||| |
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| T |
4631746 |
aaaactaacggttgtttaataaaaacactgataatcacacgtcgaaaatgtgcaaatcaggtatactatgctagttgaataattgaaatcatatcacaca |
4631647 |
T |
|
| Q |
211 |
ac |
212 |
Q |
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|| |
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| T |
4631646 |
ac |
4631645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 10398737 - 10398671
Alignment:
| Q |
30 |
gaacaccatgaacactcaaacatttcttgaaaaaactttgcacaatatgttctatgatttctagttt |
96 |
Q |
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|||||||||||| | |||||||||| |||||||| |||||||||||||| ||| | |||||||||| |
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| T |
10398737 |
gaacaccatgaatattcaaacattttttgaaaaacatttgcacaatatgtcctagggtttctagttt |
10398671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 49300431 - 49300497
Alignment:
| Q |
30 |
gaacaccatgaacactcaaacatttcttgaaaaaactttgcacaatatgttctatgatttctagttt |
96 |
Q |
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| T |
49300431 |
gaacatcatgaacattcaaacattttctgaaaaacaattgcacaataagttctaagatttctagttt |
49300497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 22259443 - 22259500
Alignment:
| Q |
39 |
gaacactcaaacatttcttgaaaaaactttgcacaatatgttctatgatttctagttt |
96 |
Q |
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||||| |||||||||| ||||||||| |||||||| ||||| || |||||||||||| |
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| T |
22259443 |
gaacattcaaacattttctgaaaaaacattgcacaacatgttataggatttctagttt |
22259500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 42577123 - 42577160
Alignment:
| Q |
111 |
aaaactaatgcttgtttaccaaaaacacatgtaaacaa |
148 |
Q |
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|||||||||| ||||||||||||||||| ||||||||| |
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| T |
42577123 |
aaaactaatgattgtttaccaaaaacacctgtaaacaa |
42577160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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