View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5693_low_3 (Length: 361)

Name: NF5693_low_3
Description: NF5693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5693_low_3
NF5693_low_3
[»] chr6 (8 HSPs)
chr6 (19-351)||(6920902-6921232)
chr6 (27-270)||(6954147-6954393)
chr6 (27-271)||(6942589-6942841)
chr6 (23-189)||(6934945-6935111)
chr6 (23-237)||(6947493-6947710)
chr6 (34-188)||(20770823-20770982)
chr6 (18-172)||(17369842-17369996)
chr6 (233-273)||(17370022-17370062)
[»] chr7 (12 HSPs)
chr7 (26-237)||(1985617-1985830)
chr7 (43-167)||(15571632-15571756)
chr7 (29-188)||(14076842-14077001)
chr7 (29-188)||(14386870-14387029)
chr7 (27-155)||(13416657-13416785)
chr7 (106-250)||(18514468-18514618)
chr7 (115-187)||(22064356-22064428)
chr7 (115-182)||(19350803-19350870)
chr7 (105-179)||(19597401-19597475)
chr7 (115-153)||(22524940-22524978)
chr7 (284-328)||(15571409-15571453)
chr7 (115-187)||(18982666-18982738)
[»] scaffold0354 (1 HSPs)
scaffold0354 (34-263)||(7663-7887)
[»] chr5 (1 HSPs)
chr5 (27-176)||(18964561-18964710)
[»] chr4 (5 HSPs)
chr4 (115-188)||(53775101-53775174)
chr4 (115-153)||(2911335-2911373)
chr4 (115-185)||(11970722-11970792)
chr4 (211-272)||(53775166-53775226)
chr4 (118-186)||(11981422-11981490)
[»] chr2 (4 HSPs)
chr2 (34-180)||(14515067-14515217)
chr2 (115-175)||(18908517-18908577)
chr2 (115-175)||(18913265-18913325)
chr2 (115-182)||(20712266-20712331)
[»] scaffold0097 (1 HSPs)
scaffold0097 (115-182)||(16105-16170)
[»] chr8 (1 HSPs)
chr8 (115-179)||(27618727-27618791)


Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 6921232 - 6920902
Alignment:
Q  19 aatataccagaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  6921232 aatataccagaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaattttgtggttcactgccaagggatatg 6921133  T
Q  119 ttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921132 ttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgat 6921033  T
Q  219 aatttcatatcatggttttgatttgattatattgttgaatgattatctgttttattaactgtgaattttctcaattttatttactgttctaattttgagt 318  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6921032 aatt--atatcatggttttgatttgattatattgttgaatgattatctgttttattaactgtgaattttctcgattttatttactgttctaattttgagt 6920935  T
Q  319 ttttatgtgtccattgatagaatgcaccctttg 351  Q
    |||||||||||||||||||||||||||||||||    
T  6920934 ttttatgtgtccattgatagaatgcaccctttg 6920902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 27 - 270
Target Start/End: Complemental strand, 6954393 - 6954147
Alignment:
Q  27 agaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagc 126  Q
    |||||| ||||||||||||||||  ||| |||||||||||| || |||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6954393 agaccaagcaattctctataatttaaaaaataatagagcaacgagaattaaaagtaccaataaaatttggtggtccgctgccaagggatatgttgaaagc 6954294  T
Q  127 ttggtatcgacttcttgaaagtaagtttttgtt-cgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtga-taatttc 224  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||    
T  6954293 ttggtatcgacttcttgaaagtatgttttttttccgatgatttacttgtttgaatttgtgttagcttgtctatggtacaatgtattttgtgattattttc 6954194  T
Q  225 atatcatggttttgatttgattatattg-ttgaatgattatctgttt 270  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  6954193 ataccatggttttgatttgattatattgtttgaatgattatctgttt 6954147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 27 - 271
Target Start/End: Complemental strand, 6942841 - 6942589
Alignment:
Q  27 agaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagc 126  Q
    |||||| |||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6942841 agaccaagcaattctctataatttgaaagataatagagcaaagagaattaaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagc 6942742  T
Q  127 ttggtatcgacttcttgaaagtaagtttttgttcgatgatttactt-------gtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgata 219  Q
    |||||||| |||||||||||||||||||||||| ||| |||| | |        ||||||||||||||||||||||||||||| |||||||||||||||     
T  6942741 ttggtatcaacttcttgaaagtaagtttttgtttgattatttccatatcatggttttgaatttgtgttagcttgtgtatggtagaatgtattttgtgatt 6942642  T
Q  220 attt-catatcatggttttgatttgattatattgttgaatgattatctgtttt 271  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||||||    
T  6942641 atttccatatcatggttttgattttaatatattgttgaatgattatctgtttt 6942589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 6935111 - 6934945
Alignment:
Q  23 taccagaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttga 122  Q
    |||||||||| ||| ||||||||||||||| |||||||| |||||||| |||| |||||| |  ||||| || ||||| || ||||||||||||||||||    
T  6935111 taccagaccaagcatttctctataattggagagataatacagcaaagagaattaaaagtaacggtaaaaatttgtggttcagtgccaagggatatgttga 6935012  T
Q  123 aagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttag 189  Q
    ||| ||||||||||||||||||| |||| ||| | ||| ||||||||||||||||||||||||||||    
T  6935011 aagtttggtatcgacttcttgaaggtaattttctcttcaatgatttacttgtttgaatttgtgttag 6934945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 6947710 - 6947493
Alignment:
Q  23 taccagaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttga 122  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| ||||| |||| |||||||||| ||||||| ||||| || |||||| |||||||||||    
T  6947710 taccagaccaagcatttctctataattggagagataatagagtaaagagaattaaaagtaccaacaaaattttgtggttcagtgccaatggatatgttga 6947611  T
Q  123 aagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatg--gtacaatgtattttgtga-ta 219  Q
    |||||||| |||||  | ||||| |||||||| | || ||||||||||||||||| ||||| ||||| || ||||||  ||||||| |||| ||||| ||    
T  6947610 aagcttggcatcgatattttgaaggtaagtttctcttggatgatttacttgtttgtatttgagttagtttatgtatgatgtacaatatattgtgtgatta 6947511  T
Q  220 atttcatatcatggtttt 237  Q
     ||||| |||||||||||    
T  6947510 ttttcaaatcatggtttt 6947493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 20770823 - 20770982
Alignment:
Q  34 gcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaa-----gctt 128  Q
    ||||| |||||||||| |||||||||||||  ||||| ||||||||||||| || ||||||||||||  | ||| ||||  ||||||||||     | ||    
T  20770823 gcaatcctctataatttgaaagataatagactaaagagaattgaaagtacctatgaaatttggtggtatagtgctaaggattatgttgaaagtttggttt 20770922  T
Q  129 ggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 188  Q
    ||||||||| | |||||||||||||  | |||||||||||||||||||||||||||||||    
T  20770923 ggtatcgacctgttgaaagtaagttcctcttcgatgatttacttgtttgaatttgtgtta 20770982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 17369842 - 17369996
Alignment:
Q  18 aaatataccagaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatat 117  Q
    |||||||  |||||| | ||||||||||||||||| | ||||||||| ||||| |||||||| |||| ||| ||||   |||    || ||||||| |||    
T  17369842 aaatataggagaccaagaaattctctataattggagaaataatagagtaaagaaaattgaaaatacctatagaattatttggaaggcttccaagggctat 17369941  T
Q  118 gttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttactt 172  Q
    ||||||||||||||||| |||| |||||||||||||  | |||||||||||||||    
T  17369942 gttgaaagcttggtatctacttgttgaaagtaagttactcttcgatgatttactt 17369996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 17370022 - 17370062
Alignment:
Q  233 gttttgatttgattatattgttgaatgattatctgttttat 273  Q
    ||||||||||||||  |||||||||||||||||| ||||||    
T  17370022 gttttgatttgattgcattgttgaatgattatctattttat 17370062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 1985830 - 1985617
Alignment:
Q  26 cagaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaag 125  Q
    ||||||| ||| ||||||||||| ||| ||||||||||| | | | |||| |||||||||||| ||||| ||||| || |||||||||||| ||||||||    
T  1985830 cagaccaagcatttctctataataggagagataatagagtagaaagaattaaaagtaccaatagaattttgtggttcagtgccaagggatacgttgaaag 1985731  T
Q  126 cttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatg-gtacaatgtattttgtga-taattt 223  Q
    ||||||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||||||  |||||| |||| ||||| || |||    
T  1985730 cttggtatcgatttcttgaaggtaagtttctcttcgatgatttacttgtttgaatttgtgttagtttgtgtatgtatacaatatattgtgtgattatttt 1985631  T
Q  224 catatcatggtttt 237  Q
    || |||||||||||    
T  1985630 caaatcatggtttt 1985617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 15571756 - 15571632
Alignment:
Q  43 tataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcgacttctt 142  Q
    |||||||||| | ||||||||| ||||| |||| |||||| ||| |||||  | ||||||| ||||| |||||||||||||||||||||||||||||| |    
T  15571756 tataattggagatataatagagtaaagagaattaaaagtaacaaaaaaatccgttggtccaatgccaggggatatgttgaaagcttggtatcgacttcct 15571657  T
Q  143 gaaagtaagtttttgttcgatgatt 167  Q
    |||||||||||||||||||||||||    
T  15571656 gaaagtaagtttttgttcgatgatt 15571632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 14076842 - 14077001
Alignment:
Q  29 accaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagctt 128  Q
    |||| |||||| |||||||||||| ||||||||||| ||||| |||| ||| |||||||| ||||| |||||    | |||||   ||||||||||||||    
T  14076842 accaagcaattatctataattggagagataatagagtaaagagaattaaaaataccaatagaattttgtggttgcattccaagaattatgttgaaagctt 14076941  T
Q  129 ggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 188  Q
    ||||||||||| | |||||||||||  | ||||||||||||| ||||||||| |||||||    
T  14076942 ggtatcgacttttagaaagtaagttcctcttcgatgatttacatgtttgaatctgtgtta 14077001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 14386870 - 14387029
Alignment:
Q  29 accaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagctt 128  Q
    |||| |||||| |||||||||||| ||||||||||| ||||| |||| ||| |||||||| ||||| |||||    | |||||   ||||||||||||||    
T  14386870 accaagcaattatctataattggagagataatagagtaaagagaattaaaaataccaatagaattttgtggttgcattccaagaattatgttgaaagctt 14386969  T
Q  129 ggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 188  Q
    ||||||||||| | |||||||||||  | ||||||||||||| ||||||||| |||||||    
T  14386970 ggtatcgacttttagaaagtaagttcctcttcgatgatttacatgtttgaatctgtgtta 14387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 13416785 - 13416657
Alignment:
Q  27 agaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagc 126  Q
    |||||| | ||||| ||| ||| ||| ||||||||||| ||||| |||| ||||| ||||| |||||||||||| |   |||||||||||||||||||||    
T  13416785 agaccaagtaattcactacaataggagagataatagagtaaagagaattaaaagtcccaatcaaatttggtggttcgacgccaagggatatgttgaaagc 13416686  T
Q  127 ttggtatcgacttcttgaaagtaagtttt 155  Q
    ||||||||||||||  ||||||| |||||    
T  13416685 ttggtatcgacttcaagaaagtatgtttt 13416657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 250
Target Start/End: Complemental strand, 18514618 - 18514468
Alignment:
Q  106 gccaagggatatgttgaaagcttggtatc----gacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatg-g 200  Q
    ||||||| ||||||||| |||||| ||||    ||||| | ||||||||||   |||||  ||||||||||||||||||||| ||||  | ||||  | |    
T  18514618 gccaaggcatatgttgagagcttgatatctacagacttgtggaaagtaagtccctgttccgtgatttacttgtttgaatttgagttaaatcgtgtccgtg 18514519  T
Q  201 tacaatgtattttgtgataattt-catatcatggttttgatttgattatat 250  Q
    ||||||||||  ||| || |||| |||||||||||||||||||||||||||    
T  18514518 tacaatgtatcgtgtcattattttcatatcatggttttgatttgattatat 18514468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 22064356 - 22064428
Alignment:
Q  115 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtt 187  Q
    |||| |||||| ||||| |||  || |||||||||||||| | | ||| ||||||||||||||||||||||||    
T  22064356 tatgatgaaaggttggtttcgtattgttgaaagtaagtttctttacgacgatttacttgtttgaatttgtgtt 22064428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 19350870 - 19350803
Alignment:
Q  115 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaattt 182  Q
    |||||||||||||| || || || |||||||||||||||| | ||  |||||||| ||||||||||||    
T  19350870 tatgttgaaagcttagtttcaacctcttgaaagtaagtttctctttaatgatttaattgtttgaattt 19350803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 19597475 - 19597401
Alignment:
Q  105 tgccaagggatatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaa 179  Q
    |||||| | |||||||||||||||||| ||||||  || ||||||||||| | ||| |  |||||||||||||||    
T  19597475 tgccaatgaatatgttgaaagcttggtttcgactaattaaaagtaagtttcttttcaacaatttacttgtttgaa 19597401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 22524978 - 22524940
Alignment:
Q  115 tatgttgaaagcttggtatcgacttcttgaaagtaagtt 153  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  22524978 tatgttgaaagcttggtttcaacttcttgaaagtaagtt 22524940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 15571453 - 15571409
Alignment:
Q  284 ttttctcaattttatttactgttctaattttgagtttttatgtgt 328  Q
    |||| |||||||||||||||||| |||||||||| ||||| ||||    
T  15571453 ttttttcaattttatttactgttttaattttgagcttttaagtgt 15571409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 18982738 - 18982666
Alignment:
Q  115 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtt 187  Q
    ||||||||||||||||| ||||||  |||||||||| ||| | ||| |  ||||||||| |||||||| ||||    
T  18982738 tatgttgaaagcttggtttcgactagttgaaagtaaatttcttttcaactatttacttgattgaatttttgtt 18982666  T

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Target: scaffold0354 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 34 - 263
Target Start/End: Original strand, 7663 - 7887
Alignment:
Q  34 gcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtat 133  Q
    |||||| ||||||||| || ||||||||||| ||| | |||| ||||||||||| |||||  ||||| || ||||||||||||||| ||||||||||||     
T  7663 gcaattgtctataatttgagagataatagagtaaatagaattaaaagtaccaatcaaattccgtggttcaatgccaagggatatgtagaaagcttggtac 7762  T
Q  134 cgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtga-taatttcatatcatg 232  Q
    |||||||||||| ||| | ||||| ||||| |||||||||||||||||| |||||| ||||     ||||| ||| || ||||| || |||||||| |||    
T  7763 cgacttcttgaaggtatg-ttttgctcgatcatttacttgtttgaatttttgttagtttgt-----gtacattgtcttgtgtgattattttcatattatg 7856  T
Q  233 gttttgatttgattatattgttgaatgatta 263  Q
    |||||||||||||||||||||| || |||||    
T  7857 gttttgatttgattatattgttcaacgatta 7887  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 18964710 - 18964561
Alignment:
Q  27 agaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagc 126  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||| |||||||| |||   |||||  |  |||    || ||||||| ||||||||||||    
T  18964710 agaccaagcaattctctataattggagagataatagagtaaagaaaattgaaaatacatgtaaaaaattttggaaggcttccaagggctatgttgaaagc 18964611  T
Q  127 ttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgttt 176  Q
    ||| |||| |||| |||||||||||||  | || ||||| ||||||||||    
T  18964610 ttgatatctacttgttgaaagtaagttcctctttgatgacttacttgttt 18964561  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 53775101 - 53775174
Alignment:
Q  115 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 188  Q
    |||||||||||||||||||| || | |||||||||||||  | ||| | |||||||||||||||||||||||||    
T  53775101 tatgttgaaagcttggtatcaacgtgttgaaagtaagttcctcttccaagatttacttgtttgaatttgtgtta 53775174  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 2911335 - 2911373
Alignment:
Q  115 tatgttgaaagcttggtatcgacttcttgaaagtaagtt 153  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  2911335 tatgtagaaagcttggtatcaacttcttgaaagtaagtt 2911373  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 11970792 - 11970722
Alignment:
Q  115 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtg 185  Q
    ||||||||||||||||| | |  || |||||||||||||| | | |||  |||||||||||||||||||||    
T  11970792 tatgttgaaagcttggttttgtattgttgaaagtaagtttctctacgacaatttacttgtttgaatttgtg 11970722  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 53775166 - 53775226
Alignment:
Q  211 tttgtgataatttcatatcatggttttgatttgattatattgttgaatgattatctgtttta 272  Q
    |||||| |||||| |||| || |||||||||||||| ||||||||||||||| ||| |||||    
T  53775166 tttgtgttaattt-atatgatagttttgatttgattgtattgttgaatgattctctctttta 53775226  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 11981490 - 11981422
Alignment:
Q  118 gttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgt 186  Q
    |||||||||||||| |||  || |||||||||||||| | | | |  ||||||||||||||||||||||    
T  11981490 gttgaaagcttggtttcgtattgttgaaagtaagtttctctacaacaatttacttgtttgaatttgtgt 11981422  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 14515067 - 14515217
Alignment:
Q  34 gcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtat 133  Q
    |||||||| || ||||||||||||||||||| ||||| |||  |||| ||||||| ||||   |||  ||  ||||||| |||||||||||| ||| |||    
T  14515067 gcaattctttacaattggaaagataatagagtaaagagaatcaaaagcaccaatagaattacatggagcagggccaaggcatatgttgaaagtttgatat 14515166  T
Q  134 cgac----ttcttgaaagtaagtttttgttcgatgatttacttgtttgaat 180  Q
    ||||    || || ||||||||||  ||||| |||||||||||||||||||    
T  14515167 cgacagacttgttaaaagtaagttcctgttcaatgatttacttgtttgaat 14515217  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 18908577 - 18908517
Alignment:
Q  115 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtt 175  Q
    ||||||||||||||||| || || |||||||||||||||||| |||||||||||| |||||    
T  18908577 tatgttgaaagcttggtttcaacctcttgaaagtaagtttttcttcgatgatttaattgtt 18908517  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 18913325 - 18913265
Alignment:
Q  115 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtt 175  Q
    |||||||||||||||||||| || |||||||||||||||| | ||| |||||||| |||||    
T  18913325 tatgttgaaagcttggtatcaacctcttgaaagtaagtttctcttcaatgatttaattgtt 18913265  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 20712331 - 20712266
Alignment:
Q  115 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaattt 182  Q
    ||||| ||||||||||| || |||| |||||||||||||  | ||  |||||||||||||||||||||    
T  20712331 tatgtcgaaagcttggtttcaacttgttgaaagtaagttcctctt--atgatttacttgtttgaattt 20712266  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 16170 - 16105
Alignment:
Q  115 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaattt 182  Q
    ||||| ||||||||||| || |||| |||||||||||||  | ||  |||||||||||||||||||||    
T  16170 tatgtcgaaagcttggtttcaacttgttgaaagtaagttcctctt--atgatttacttgtttgaattt 16105  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 27618727 - 27618791
Alignment:
Q  115 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaa 179  Q
    ||||||||||||||||| || | ||||||||||||||||  | || || || |||||||||||||    
T  27618727 tatgttgaaagcttggtttcaatttcttgaaagtaagttcctatttgacgaattacttgtttgaa 27618791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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