View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5693_low_6 (Length: 208)
Name: NF5693_low_6
Description: NF5693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5693_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 3902989 - 3902803
Alignment:
| Q |
6 |
attgtttgaagaataatattgctcggaagttattgaggctgaggtgtactatgataatgg-aaacgtctgaataacaatttattcagttatttttgcatt |
104 |
Q |
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| T |
3902989 |
attgtttgaagaataatattgctcggaagttattgaggctgaggtgtactatgataatgggaaacgtctgaataacaatttgttcagttatttttgcatt |
3902890 |
T |
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| Q |
105 |
gtgaggtaggctcctactgcggtgaagtacaaacaagtacatacaatattgtctaattttccattacaaagaaactggctcgcaatg |
191 |
Q |
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| T |
3902889 |
gtgaggtaggctcctactgcggtgaagtacaaacaagtacattcaatattgtctaattttccattacaaagagactggctcgcaatg |
3902803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 195
Target Start/End: Complemental strand, 3905560 - 3905435
Alignment:
| Q |
70 |
gtctgaataacaatttattcagttatttttgcattgtgaggtaggctcctactgcggtgaagtacaaacaagtacatacaatattgtctaattttccatt |
169 |
Q |
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|||||||| ||| ||| || ||||| |||||||||||||| |||| | | ||||||||||||| || || ||||| ||||||||||||||| | ||| |
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| T |
3905560 |
gtctgaattacactttgttaagttacttttgcattgtgagatagggttacagtgcggtgaagtaccaaaaaatacattgaatattgtctaatttactatt |
3905461 |
T |
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| Q |
170 |
acaaagaaactggctcgcaatgtgat |
195 |
Q |
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| T |
3905460 |
gcaaagtgactctctcgcaatgtgat |
3905435 |
T |
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