View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5694_high_2 (Length: 288)
Name: NF5694_high_2
Description: NF5694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5694_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 10068207 - 10068463
Alignment:
| Q |
13 |
aaaatacctagtgagtggtggaataggccaaaaaattgactatgtcgtggaaagaaactttcatcaaggttattaaaaaattttaatctaggcattagtt |
112 |
Q |
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| T |
10068207 |
aaaatacctagtgagtagtggaataggccaaaaaattgactatgtcgtggaaagaaactttcatcaaggttattaaaaaactttaatctaggcattagtt |
10068306 |
T |
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| Q |
113 |
aacttcatatataattaatcagacaaagttcgtttgtgtaagtaactggaaaaaggaatttgtctatgattgattcagtctgtgggatttgttaatttaa |
212 |
Q |
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| T |
10068307 |
aacttcaaatataattaatcagacaaagttcatttgtgtaagtaactggaaaaaagaatttgtctatgattgatacagtctatgggatttgttaatttaa |
10068406 |
T |
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| Q |
213 |
atgtcaaccttgatgattaagataaaattcatattaagtgaaatacatggaaggtgt |
269 |
Q |
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| T |
10068407 |
atgtcaaccttgatgattaagataaaattcatattaagtgaaatacatggaaggtgt |
10068463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 136 - 260
Target Start/End: Original strand, 10062819 - 10062943
Alignment:
| Q |
136 |
caaagttcgtttgtgtaagtaactggaaaaaggaatttgtctatgattgattcagtctgtgggatttgttaatttaaatgtcaaccttgatgattaagat |
235 |
Q |
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| T |
10062819 |
caaagttcgtctatgcaagtaattggaaaaagtattttgtccatgattgatttagtccgtgggatttgttgatttaaatgtcaaccttaatgattaagat |
10062918 |
T |
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| Q |
236 |
aaaattcatattaagtgaaatacat |
260 |
Q |
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| T |
10062919 |
aaaattcatattgagtgaaatacat |
10062943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 10062395 - 10062450
Alignment:
| Q |
26 |
agtggtggaataggccaaaaaattgactatgtcgtggaaagaaactttcatcaagg |
81 |
Q |
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| T |
10062395 |
agtgatggactaggcctaaaagttgaccatgtcgtgaaaagaaactttcatcaagg |
10062450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 8358152 - 8358118
Alignment:
| Q |
235 |
taaaattcatattaagtgaaatacatggaaggtgt |
269 |
Q |
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| T |
8358152 |
taaaattcatattatgtgaaatacatggaaggtgt |
8358118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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