View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5694_low_1 (Length: 412)

Name: NF5694_low_1
Description: NF5694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5694_low_1
NF5694_low_1
[»] chr7 (4 HSPs)
chr7 (1-407)||(3753878-3754284)
chr7 (1-407)||(4045954-4046360)
chr7 (142-267)||(46383278-46383404)
chr7 (139-205)||(46383849-46383914)
[»] chr6 (18 HSPs)
chr6 (4-267)||(6465195-6465458)
chr6 (7-245)||(6457257-6457495)
chr6 (115-267)||(6473207-6473359)
chr6 (105-245)||(1831943-1832083)
chr6 (115-215)||(6526286-6526386)
chr6 (139-207)||(6516295-6516363)
chr6 (115-186)||(13035906-13035977)
chr6 (4-266)||(6505343-6505605)
chr6 (135-265)||(6520757-6520887)
chr6 (115-215)||(1839050-1839148)
chr6 (126-263)||(6528059-6528196)
chr6 (127-203)||(6461997-6462073)
chr6 (166-267)||(6523254-6523355)
chr6 (115-163)||(1822310-1822358)
chr6 (127-203)||(6496599-6496675)
chr6 (159-245)||(1827215-1827301)
chr6 (115-164)||(1827157-1827206)
chr6 (297-401)||(6457101-6457205)


Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 3753878 - 3754284
Alignment:
Q  1 aattttttgaaggaaactattgagccatggttgaatggaactttcaaagggaatggttttctctatgnnnnnnnntggggtggattagttactcaacaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||        |||||||||||||||||| ||||||    
T  3753878 aattttttgaaggaaactattgagccatggttgaatggaactttcaaagggaatggtttcttgtatgaaaaaaaatggggtggattagttactaaacaag 3753977  T
Q  101 gtgttaataattcaggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagat 200  Q
    | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  3753978 gggttaataattcagttgttgattttggttttggaatttataatgatcatcattatcatttaggttattttctttatggaattgctgttcttgcaaagat 3754077  T
Q  201 tgatccattttggggacaaaagtataaaccacaagcttattcacttttgcaagattttatgaacttgggccaaagggataacaaaaactatccaacttta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754078 tgatccattttggggacaaaagtataaaccacaagcttattcacttttgcaagattttatgaacttgggccaaagggataacaaaaactatccaacttta 3754177  T
Q  301 aggtgttttgattttttcaagttgcattcttgggctgcaggagtgactgaatatgaaaatggaaggaatcaagaaagttcaagtgaagcagtgaatgcat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754178 aggtgttttgattttttcaagttgcattcttgggctgcaggagtgactgaatatgaaaatggaaggaatcaagaaagttcaagtgaagcagtgaatgcat 3754277  T
Q  401 attattc 407  Q
    |||||||    
T  3754278 attattc 3754284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 4046360 - 4045954
Alignment:
Q  1 aattttttgaaggaaactattgagccatggttgaatggaactttcaaagggaatggttttctctatgnnnnnnnntggggtggattagttactcaacaag 100  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||        |||||||||||||||||||||||||    
T  4046360 aattttttgaaggaaactattgagccatggttggatggaaatttcaaagggaatggttttttctatgaaaaaagttggggtggattagttactcaacaag 4046261  T
Q  101 gtgttaataattcaggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagat 200  Q
    |  ||||| ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||    
T  4046260 ggattaatgattcaagtgctgattttggttttggaatgtataatgatcatcattatcatttaggttattttctttatggaattggagttcttgcaaaaat 4046161  T
Q  201 tgatccattttggggacaaaagtataaaccacaagcttattcacttttgcaagattttatgaacttgggccaaagggataacaaaaactatccaacttta 300  Q
    |||||| | |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4046160 tgatccttcttggggacaaaagtataaaccacaagtttattcacttgtgaaagattttatgaacttgggccaaagggataacaaaaattatccaacttta 4046061  T
Q  301 aggtgttttgattttttcaagttgcattcttgggctgcaggagtgactgaatatgaaaatggaaggaatcaagaaagttcaagtgaagcagtgaatgcat 400  Q
    ||||||||||||   | ||||||||||||||||||| | ||  |||| |||| |||| ||||||| |||||||||||||| |||||||| |||||||| |    
T  4046060 aggtgttttgatccatacaagttgcattcttgggcttcgggtttgaccgaatttgaacatggaagaaatcaagaaagttctagtgaagctgtgaatgcgt 4045961  T
Q  401 attattc 407  Q
    | |||||    
T  4045960 actattc 4045954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 267
Target Start/End: Complemental strand, 46383404 - 46383278
Alignment:
Q  142 aatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggggacaaaagtataaaccac-aagcttat 240  Q
    ||||||||||||||||||||||| |||| ||| ||||||||| |||| || || |||||||||||  |||||||    ||||||||  | | ||||||||    
T  46383404 aatgatcatcattatcatttaggatattctctctatggaattacagtgctcgccaagattgatcctatttggggtaggaagtataagtctcaaagcttat 46383305  T
Q  241 tcacttttgcaagattttatgaacttg 267  Q
    |||||  || ||||| |||||||||||    
T  46383304 tcactcatggaagatattatgaacttg 46383278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 46383914 - 46383849
Alignment:
Q  139 tataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatc 205  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||| || ||||| ||||||||||    
T  46383914 tataatgatcatcatcatcatttaggatattttctctatggaattgc-gtgcttgctaagattgatc 46383849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 267
Target Start/End: Complemental strand, 6465458 - 6465195
Alignment:
Q  4 tttttgaaggaaactattgagccatggttgaatggaactttcaaagggaatggttttctctatgnnnnnnnntggggtggattagttactcaacaaggtg 103  Q
    ||||||||||||||||||||||| ||| |  |||||||||| || || ||||| ||||||||||        ||||| ||| | |||||  |||||||      
T  6465458 tttttgaaggaaactattgagccttggcttgatggaacttttaatggaaatggatttctctatgatggaaaatggggaggaattgttaccaaacaagggt 6465359  T
Q  104 ttaataattcaggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattga 203  Q
     |||| || | |||| ||||||||| || ||| |||||||||||||||||||||||||||| || ||||| ||||||||||| || ||||||||||||||    
T  6465358 ctaatgatactggtgctgattttggattcggagtttataatgatcatcattatcatttaggatactttctctatggaattgctgtgcttgcaaagattga 6465259  T
Q  204 tccattttggggacaaaagtataaaccacaagcttattcacttttgcaagattttatgaacttg 267  Q
    |||| |||||||    |||||||| || ||||||||||||||  ||   |||||||||||||||    
T  6465258 tccaatttggggtaggaagtataagcctcaagcttattcactcatggctgattttatgaacttg 6465195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 6457495 - 6457257
Alignment:
Q  7 ttgaaggaaactattgagccatggttgaatggaactttcaaagggaatggttttctctatgnnnnnnnntggggtggattagttactcaacaaggtgtta 106  Q
    ||||||||||| || ||||||||||||||||||||||| || |  ||||||||||| ||||        ||||| ||| |  ||||  |||||||   |     
T  6457495 ttgaaggaaacgatcgagccatggttgaatggaacttttaacgaaaatggttttctttatgatggaaaatggggaggaatcattaccaaacaaggctctc 6457396  T
Q  107 ataattcaggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatcc 206  Q
    |  ||||||| |  |||||||| || || ||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||    
T  6457395 aagattcaggggcagattttgggttcggtatttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatcc 6457296  T
Q  207 attttggggacaaaagtataaaccacaagcttattcact 245  Q
    |  |||||||  |||||||||||| ||||||||||||||    
T  6457295 agcttggggaagaaagtataaacctcaagcttattcact 6457257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 115 - 267
Target Start/End: Original strand, 6473207 - 6473359
Alignment:
Q  115 ggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggg 214  Q
    |||| |||||| || || |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||| |||||||||||| ||||||    
T  6473207 ggtgctgatttcgggttcggaatttataatgatcatcattatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggg 6473306  T
Q  215 gacaaaagtataaaccacaagcttattcacttttgcaagattttatgaacttg 267  Q
    |  | || ||||| || ||||| ||| ||||  || |||||||||||| ||||    
T  6473307 gtaagaaatataagcctcaagcctatgcactcatggaagattttatgaccttg 6473359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 105 - 245
Target Start/End: Original strand, 1831943 - 1832083
Alignment:
Q  105 taataattcaggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgat 204  Q
    ||||||| | ||||||||||| || ||||||||| |||| || ||||||||||||||||| || ||||| | |||||||||||| |||||||||||||||    
T  1831943 taataatactggtgttgatttcgggtttggaattaataacgaccatcattatcatttaggatactttctctttggaattgcagtgcttgcaaagattgat 1832042  T
Q  205 ccattttggggacaaaagtataaaccacaagcttattcact 245  Q
    ||| |||||||   | ||||||| || ||||| ||||||||    
T  1832043 ccaatttggggtagagagtataagcctcaagcctattcact 1832083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 6526386 - 6526286
Alignment:
Q  115 ggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggg 214  Q
    |||| ||||||||| || ||| |||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||| |||||||||||  ||||||    
T  6526386 ggtgctgattttgggttcggagtttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgctaagattgatcctatttggg 6526287  T
Q  215 g 215  Q
    |    
T  6526286 g 6526286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 6516295 - 6516363
Alignment:
Q  139 tataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatcca 207  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||  ||||||||||||    
T  6516295 tataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatcca 6516363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 13035906 - 13035977
Alignment:
Q  115 ggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgca 186  Q
    |||| |||||| || ||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||    
T  13035906 ggtgctgatttcgggtttggaatttataatgaccatcattatcatttaggttactttctctatggaattgca 13035977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 266
Target Start/End: Complemental strand, 6505605 - 6505343
Alignment:
Q  4 tttttgaaggaaactattgagccatggttgaatggaactttcaaagggaatggttttctctatgnnnnnnnntggggtggattagttactcaacaaggtg 103  Q
    |||||||||||||| |||||||| ||| |  |||||||||| || || ||||| ||||| ||||        ||||| ||| |  |||||||||||||      
T  6505605 tttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattactcaacaagggt 6505506  T
Q  104 ttaataattcaggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattga 203  Q
     |||| ||   |||| |||||| ||||| |||||||| ||||||||||| | ||| ||||| ||||||||||| | ||| ||||| |||| |||||| ||    
T  6505505 ctaatgatggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcga 6505406  T
Q  204 tccattttggggacaaaagtataaaccacaagcttattcacttttgcaagattttatgaactt 266  Q
    ||||   |||||    || |||||  | ||||| ||||||||| || ||||||||||||||||    
T  6505405 tccaacatggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaactt 6505343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 265
Target Start/End: Original strand, 6520757 - 6520887
Alignment:
Q  135 aatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggggacaaaagtataaaccacaa 234  Q
    ||||||||||| ||| | | |||||||||| ||||| |||||||| ||||| |||||||| ||  |||||||   |||||||  ||||||||| || |||    
T  6520757 aatttataatgctcagcttaatcatttaggatatttcctttatggtattgctgttcttgctaaacttgatcccgattggggaagaaagtataagcctcaa 6520856  T
Q  235 gcttattcacttttgcaagattttatgaact 265  Q
    |||||| ||||  || ||||||| |||||||    
T  6520857 gcttatgcactcatggaagatttcatgaact 6520887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 1839050 - 1839148
Alignment:
Q  115 ggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggg 214  Q
    |||| |||||| || |||||||||||| |||| ||||||||||||||||| || ||||| ||  |||||||||| |   |||||||||||||| ||||||    
T  1839050 ggtgctgatttcgggtttggaatttatgatgagcatcattatcatttaggatagtttctctaatgaattgcagtgc--acaaagattgatccaatttggg 1839147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 263
Target Start/End: Complemental strand, 6528196 - 6528059
Alignment:
Q  126 tggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggggacaaaagtat 225  Q
    ||||||||||||||||||| ||||||||  |  ||| || |||||| |||||| |||||| || ||||| ||||||||||||  ||||||    ||||||    
T  6528196 tggttttggaatttataataatcatcatggtactttgggatattttgtttatgcaattgctgtgcttgctaagattgatccagcttggggtaggaagtat 6528097  T
Q  226 aaaccacaagcttattcacttttgcaagattttatgaa 263  Q
    ||  | ||||| |||||| | ||| |||||||||||||    
T  6528096 aaggctcaagcatattcattattggaagattttatgaa 6528059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 6461997 - 6462073
Alignment:
Q  127 ggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattga 203  Q
    ||||| |||||||||| |||||| | | |||| || || || |||||||||||||||||||||||| ||||||||||    
T  6461997 ggtttcggaatttatagtgatcaccctgatcacttgggatactttctttatggaattgcagttcttacaaagattga 6462073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 6523355 - 6523254
Alignment:
Q  166 tattttctttatggaattgcagttcttgcaaagattgatccattttggggacaaaagtataaaccacaagcttattcacttttgcaagattttatgaact 265  Q
    ||||| |||||||| ||| | ||||||| || ||||||||||| ||||||  | |||||||| |  |||| |||||||||  || |||||||||||||||    
T  6523355 tatttcctttatggtatttctgttcttgtaatgattgatccatattggggtgagaagtataagcttcaagtttattcactcatggaagattttatgaact 6523256  T
Q  266 tg 267  Q
    ||    
T  6523255 tg 6523254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 1822310 - 1822358
Alignment:
Q  115 ggtgttgattttggttttggaatttataatgatcatcattatcatttag 163  Q
    |||| ||||||||| ||| ||||||||||||| ||||||||||||||||    
T  1822310 ggtgctgattttgggttttgaatttataatgaccatcattatcatttag 1822358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 6496675 - 6496599
Alignment:
Q  127 ggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattga 203  Q
    ||||| ||||| ||||||||||||  | |||| ||||| || ||||||||||||||||| |||||| | ||||||||    
T  6496675 ggtttcggaatctataatgatcatgctgatcacttaggatactttctttatggaattgctgttcttactaagattga 6496599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 1827215 - 1827301
Alignment:
Q  159 tttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggggacaaaagtataaaccacaagcttattcact 245  Q
    |||||| || ||||| ||| |||||||||| ||||||||||||||| || |||||||   ||| ||||| || ||||| ||||||||    
T  1827215 tttaggatactttctctatcgaattgcagtgcttgcaaagattgattcaatttggggtagaaaatataagcctcaagcctattcact 1827301  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 1827157 - 1827206
Alignment:
Q  115 ggtgttgattttggttttggaatttataatgatcatcattatcatttagg 164  Q
    |||| |||||| || |||||||||||||| || |||||||||||||||||    
T  1827157 ggtgctgatttcgggtttggaatttataacgaccatcattatcatttagg 1827206  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 401
Target Start/End: Complemental strand, 6457205 - 6457101
Alignment:
Q  297 tttaaggtgttttgattttttcaagttgcattcttgggctgcaggagtgactgaatatgaaaatggaaggaatcaagaaagttcaagtgaagcagtgaat 396  Q
    |||||||||||| ||| |||  || || ||||||||||||| |||| | |  |||| || | ||||||| |||||||| ||| | |||||||| ||||||    
T  6457205 tttaaggtgtttcgatctttataaatttcattcttgggctggaggactaatcgaatttgcagatggaagaaatcaagagagtactagtgaagctgtgaat 6457106  T
Q  397 gcata 401  Q
    |||||    
T  6457105 gcata 6457101  T

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