View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5694_low_3 (Length: 246)
Name: NF5694_low_3
Description: NF5694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5694_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 55072426 - 55072516
Alignment:
| Q |
59 |
ttttcttacctaagcttgaacatctccttaggatttgcttaagcactgtgttctgagcaagcttgcttgattttgatctaatggccatttt |
149 |
Q |
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| T |
55072426 |
ttttcttacctaagcttgaacatctccttaggatttgcttaagcactgtgttctgagcaagcttgcttgattttgatctaatggccatttt |
55072516 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 55072536 - 55072607
Alignment:
| Q |
175 |
gggtttgaaatggatataactaactaacttagtgaacaattagagaccaagtactattatagtggtgaggac |
246 |
Q |
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| T |
55072536 |
gggtttgaaatggatataactaactaacttagtgaacaattagagacctagtactattatagtggtgaggac |
55072607 |
T |
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