View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5694_low_4 (Length: 215)

Name: NF5694_low_4
Description: NF5694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5694_low_4
NF5694_low_4
[»] chr5 (7 HSPs)
chr5 (1-199)||(35367616-35367814)
chr5 (55-196)||(35377274-35377415)
chr5 (55-168)||(35755664-35755777)
chr5 (55-159)||(35426233-35426337)
chr5 (65-170)||(35411489-35411594)
chr5 (65-148)||(35386843-35386926)
chr5 (65-130)||(35371331-35371396)
[»] chr1 (2 HSPs)
chr1 (1-147)||(10419840-10420001)
chr1 (65-137)||(10414964-10415036)
[»] chr3 (1 HSPs)
chr3 (65-137)||(1154505-1154577)
[»] chr8 (2 HSPs)
chr8 (59-105)||(15294555-15294601)
chr8 (59-105)||(15474924-15474970)
[»] chr7 (1 HSPs)
chr7 (65-148)||(29622507-29622590)
[»] chr2 (3 HSPs)
chr2 (63-137)||(30626871-30626945)
chr2 (63-137)||(30663797-30663871)
chr2 (63-137)||(30672477-30672551)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 35367616 - 35367814
Alignment:
Q  1 gatagtggattcacatttgcttatgccatttcctaaagatcagacactaatgatggagtgtctagtgatgtttgctaaaataggagttgcatgttccgaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35367616 gatagtggattcacatttgcttatgccatttcttaaagatcagacactaatgatggagtgtctagtgatgtttgctaaaataggagttgcatgttccgaa 35367715  T
Q  101 gaattccctactcatcgaatgttgataaaaaatgttacagtgaagttgctggaaattaagcagaagttgctctgctaggtactactactaccttgagat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35367716 gaattccctactcatcgaatgttgataaaaaatgttacagtgaagttgctggaaattaagcagaagttgctctgctaggtactactactaccttgagat 35367814  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 35377274 - 35377415
Alignment:
Q  55 ggagtgtctagtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgttacagtgaagttgctggaa 154  Q
    |||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||  ||||| | | |||| || ||| |||||||||||| |||    
T  35377274 ggagtgtctagtgatgtttgctaatataggaattgcatgttctgaagaattccctactcagagaatgctcacaaaagatattatagtgaagttgcttgaa 35377373  T
Q  155 attaagcagaagttgctctgctaggtactactactaccttga 196  Q
    ||||| ||||| || |  ||||||| |||| |||||| ||||    
T  35377374 attaaacagaaattaccgtgctaggaactattactactttga 35377415  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 55 - 168
Target Start/End: Original strand, 35755664 - 35755777
Alignment:
Q  55 ggagtgtctagtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgttacagtgaagttgctggaa 154  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||  ||||| | | |||| |||||| | | |||||||| |||    
T  35755664 ggagtgtctagtgatgtttgctaaaataggagttgcatgttctgaagaatttcctactcagagaatgctcacaaaagatgttataattaagttgcttgaa 35755763  T
Q  155 attaagcagaagtt 168  Q
    ||||| ||||||||    
T  35755764 attaaacagaagtt 35755777  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 55 - 159
Target Start/End: Original strand, 35426233 - 35426337
Alignment:
Q  55 ggagtgtctagtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgttacagtgaagttgctggaa 154  Q
    ||||||| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||  ||||| | | |||| |||||| ||| |||||||| |||    
T  35426233 ggagtgtttagtgatgtttgctaaaataggaattgcatgttctgaagaatttcctactcagagaatgctcacaaaagatgttatagttaagttgcttgaa 35426332  T
Q  155 attaa 159  Q
    |||||    
T  35426333 attaa 35426337  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 170
Target Start/End: Original strand, 35411489 - 35411594
Alignment:
Q  65 gtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgttacagtgaagttgctggaaattaagcaga 164  Q
    ||||||||||||| ||| ||||||||||| || || || || ||| |||||||||||||||||||| ||||||  || |||||||| ||||| ||  |||    
T  35411489 gtgatgtttgctagaatcggagttgcatgctctgacgagtttcctgctcatcgaatgttgataaaagatgttatcgttaagttgcttgaaataaaaaaga 35411588  T
Q  165 agttgc 170  Q
    ||||||    
T  35411589 agttgc 35411594  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 35386843 - 35386926
Alignment:
Q  65 gtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgttacagtgaagttg 148  Q
    ||||||||||||  ||| ||||| ||||||||  ||||  || ||||||||||||||||||||||| |||||| ||| ||||||    
T  35386843 gtgatgtttgctgcaattggagtcgcatgttctaaagaggtcactactcatcgaatgttgataaaagatgttatagttaagttg 35386926  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 35371331 - 35371396
Alignment:
Q  65 gtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaa 130  Q
    ||||||||||||  ||| |||||||||||||| ||||| |  ||| ||||||||||||||||||||    
T  35371331 gtgatgtttgctgcaattggagttgcatgttctgaagagtctcctgctcatcgaatgttgataaaa 35371396  T

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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 10420001 - 10419840
Alignment:
Q  1 gatagtggattcacatttgcttatgccatttcctaaagatcagacactaatgatgga---------------gtgtctagtgatgtttgctaaaatagga 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||               ||||||||||||||||||| ||||||||    
T  10420001 gatagtggattcacatttgcttatgccatttcctaaagatcagacactaatgacggaaaaaaacattaaggagtgtctagtgatgtttgctgaaatagga 10419902  T
Q  86 gttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgttacagtgaagtt 147  Q
    ||||||||||||||||||||| ||||||||||| || | | |||| |||||| |||||||||    
T  10419901 gttgcatgttccgaagaattcgctactcatcgagtgctcacaaaagatgttatagtgaagtt 10419840  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 10415036 - 10414964
Alignment:
Q  65 gtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgtta 137  Q
    |||||||||| |  ||| |||||||||||||| |||||| | ||| |||||||||||||||||||| ||||||    
T  10415036 gtgatgtttggtgcaatcggagttgcatgttctgaagaagttccttctcatcgaatgttgataaaagatgtta 10414964  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 1154505 - 1154577
Alignment:
Q  65 gtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgtta 137  Q
    ||||||||||||| ||| |||||||||||| | ||||| || ||| |||||||||||||||||||| ||||||    
T  1154505 gtgatgtttgctagaattggagttgcatgtactgaagagtttcctgctcatcgaatgttgataaaacatgtta 1154577  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 15294555 - 15294601
Alignment:
Q  59 tgtctagtgatgtttgctaaaataggagttgcatgttccgaagaatt 105  Q
    |||||||||||||||||||||||||||||||||||||| || |||||    
T  15294555 tgtctagtgatgtttgctaaaataggagttgcatgttctgatgaatt 15294601  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 15474924 - 15474970
Alignment:
Q  59 tgtctagtgatgtttgctaaaataggagttgcatgttccgaagaatt 105  Q
    |||||||||||||||||||||||||||||||||||||| || |||||    
T  15474924 tgtctagtgatgtttgctaaaataggagttgcatgttctgatgaatt 15474970  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 29622590 - 29622507
Alignment:
Q  65 gtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgttacagtgaagttg 148  Q
    ||||||||||||| ||| ||||||||||||||  |||| || ||| ||||||||||| | |||||| |||||| ||| ||||||    
T  29622590 gtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttg 29622507  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 30626871 - 30626945
Alignment:
Q  63 tagtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgtta 137  Q
    ||||||||||||||| ||| |||||||||||||| ||||| || ||  || ||||||||  ||||||| ||||||    
T  30626871 tagtgatgtttgctataattggagttgcatgttcagaagagtttccatctaatcgaatgccgataaaagatgtta 30626945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 30663797 - 30663871
Alignment:
Q  63 tagtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgtta 137  Q
    ||||||||||||||| ||| |||||||||||||| ||||| || ||  || ||||||||  ||||||| ||||||    
T  30663797 tagtgatgtttgctataattggagttgcatgttctgaagagtttccatcttatcgaatgccgataaaagatgtta 30663871  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 30672477 - 30672551
Alignment:
Q  63 tagtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgtta 137  Q
    ||||||||||||||| ||| |||||||||||||| ||||| || ||  || ||||||||  ||||||| ||||||    
T  30672477 tagtgatgtttgctataattggagttgcatgttctgaagagtttccatcttatcgaatgccgataaaagatgtta 30672551  T

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