View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5695-Insertion-2 (Length: 885)
Name: NF5695-Insertion-2
Description: NF5695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5695-Insertion-2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 815; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 815; E-Value: 0
Query Start/End: Original strand, 8 - 885
Target Start/End: Complemental strand, 40069438 - 40068567
Alignment:
| Q |
8 |
attcataattatcatatcattaaaaatgtttaaatttaatcatagttaattctaaagttgcacttgcacatatgattggttatgatacgctaatggtata |
107 |
Q |
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| T |
40069438 |
attcataattatcatatcattaaaaatgtttaaatttaatcatagttaattctaaagttgcatttgcacatatgattggttatgatacg------gtata |
40069345 |
T |
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| Q |
108 |
aaactttttagattgaccatatgacatgattaaactcgtgaatatagtacttacatttcgttttccatttagtcgacctagacgcgtgctaacatttaca |
207 |
Q |
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|||||||||| ||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40069344 |
aaactttttaaattgaccatgtgacatgattaaactggtgtatatagtacttacatttcgttttccatttagtcgacctagacgcgtgcttacatttaca |
40069245 |
T |
|
| Q |
208 |
atacgaccacctgccgcggacgccttcattaatggaatcatagcttcaatcatacgtttggttccaaaataattcgtatcaataaccgtatgagcatttt |
307 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40069244 |
atacgaccaccagccgcggacgccttcattaatggaatcatagcttcaatcatacgtttggttccaaaataattcgtatcaataaccgtatgagcatttt |
40069145 |
T |
|
| Q |
308 |
caactgaattatcagacccaaaattgaaattaatccctgcattgtttacctgcaaatatatgatacattatttgcttagatacatatgcagacatttaat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40069144 |
caactgaattatcagacccaaaattgaaattaatccctgcattgtttacctgcaaatatatgatacattatttgcttagatacatatgcagacatttaat |
40069045 |
T |
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| Q |
408 |
ttaattcagttatcttgcaactagattataagaaagaaagctagaaattaaccatatttgcttaataaacttgccagaatatttaagccaccatagtttt |
507 |
Q |
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| T |
40069044 |
ttaattcagttatcttgcaactagattataagaaagaaagctagaaattaaccatatttgcttaataaacttgccagaatatttaagccaccatagtttt |
40068945 |
T |
|
| Q |
508 |
cctttaaccaatcagagaattgggtgatggatgaagaatctaatacatcaagttgatgacatgccacatcgagaccaccttcttgcaagaccttaattga |
607 |
Q |
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| T |
40068944 |
cctttaaccaatcagagaattgggtgatggatgaagaatctaatacatcaagttgatgacatgccacatcgagaccaccttcttgcaagaccttaattga |
40068845 |
T |
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| Q |
608 |
ttcaacgccaacaccagcatctcttgttgttaatattacagttactccatgttcagcaagttgtcttgaaatttcaaacccaattcctctatttccacca |
707 |
Q |
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| T |
40068844 |
ttcaacgccaacaccagcatctcttgttgttaatattacagttactccatgttcagcaagttgtcttgaaatttcaaacccaattcctctatttccacca |
40068745 |
T |
|
| Q |
708 |
gtaaccacagcaattgtttccttagaccaccacctatatatatattagcccaaaattaaatttaacacatgctaggtggaaatgtactagtattcattaa |
807 |
Q |
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| T |
40068744 |
gtaaccacagcaattgtttccttagaccaccacctatatatatattagcccaaaattaaatttaacacatgctaggtggaaatatactagtattcattaa |
40068645 |
T |
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| Q |
808 |
ttccatcgattaaggattgttaactattgattcaaaaatcaatgtcattatacgcttaattaaactatgtgatccggt |
885 |
Q |
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| T |
40068644 |
ttccatcgattaaggattgttaactattgattcaaaaatcaatgtcattatacgtttaattaaactatgtgattcggt |
40068567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 536 - 749
Target Start/End: Complemental strand, 44965627 - 44965414
Alignment:
| Q |
536 |
ggatgaagaatctaatacatcaagttgatgacatgccacatcgagaccaccttcttgcaagaccttaattgattcaacgccaacaccagcatctcttgtt |
635 |
Q |
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| T |
44965627 |
ggatgaagaatctaatatatcaagttgatgacaatggacgtccaaaccaccttcttgcaagaccttaattgattcaacaccaacactagcatctcttgat |
44965528 |
T |
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| Q |
636 |
gttaatattacagttactccatgttcagcaagttgtcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagacc |
735 |
Q |
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| T |
44965527 |
gtcaacacaacagtaactccatgatctgcaagttgtcttgaaatctcaaaaccaattcctcggtttccaccggtaaccacggcaatagtttccttggacc |
44965428 |
T |
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| Q |
736 |
accacctatatata |
749 |
Q |
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| T |
44965427 |
accacctttatata |
44965414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 155 - 323
Target Start/End: Complemental strand, 44966051 - 44965883
Alignment:
| Q |
155 |
tacttacatttcgttttccatttagtcgacctagacgcgtgctaacatttacaatacgaccacctgccgcggacgccttcattaatggaatcatagcttc |
254 |
Q |
| |
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|||| ||||||||||| || ||||| ||||| | ||| | || ||||| |||||||||||||| || || || | |||||| || |||||||||||||| |
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| T |
44966051 |
tactcacatttcgtttaccgtttagacgacccaaacgtgaactcacattaacaatacgaccaccggcagcagatggcttcatcaaaggaatcatagcttc |
44965952 |
T |
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| Q |
255 |
aatcatacgtttggttccaaaataattcgtatcaataaccgtatgagcattttcaactgaattatcaga |
323 |
Q |
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| T |
44965951 |
aatcattctcttggtcccataataatttgtttcaatacatttacgagcattttcaactgagttatcaga |
44965883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 7e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 571 - 749
Target Start/End: Complemental strand, 10898499 - 10898321
Alignment:
| Q |
571 |
ccacatcgagaccaccttcttgcaagaccttaattgattcaacgccaacaccagcatctcttgttgttaatattacagttactccatgttcagcaagttg |
670 |
Q |
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||||||| | ||||||||||||||| | ||||||||||||| | ||| ||| ||||||||||| ||||| ||| ||||| | |||||| |||||||||| |
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| T |
10898499 |
ccacatccaaaccaccttcttgcaaaatcttaattgattcagcaccagcactagcatctcttgatgttagtataacagtcaatccatgagcagcaagttg |
10898400 |
T |
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| Q |
671 |
tcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagaccaccacctatatata |
749 |
Q |
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|| |||| ||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||| |
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| T |
10898399 |
cctgcaaatctcaaacccaattcctctgtttccaccggtaaccacagcaatagtttctttagaccaccacctacatata |
10898321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 155 - 360
Target Start/End: Complemental strand, 10898922 - 10898717
Alignment:
| Q |
155 |
tacttacatttcgttttccatttagtcgacctagacgcgtgctaacatttacaatacgaccacctgccgcggacgccttcattaatggaatcatagcttc |
254 |
Q |
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| T |
10898922 |
tacttacatttcgtcttccatttaatcgacctagacgcgagcttacgtttacaattcgagcaccaacaacagatggtttcatcattggaataagagcttc |
10898823 |
T |
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| Q |
255 |
aatcatacgtttggttccaaaataattcgtatcaataaccgtatgagcattttcaactgaattatcagacccaaaattgaaattaatccctgcattgttt |
354 |
Q |
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| T |
10898822 |
agtcaactttttgatgccataataatttgtttcaataaccttgcgagcattttcaacagagttatcagacccgagattgaaattaacaccagcattgttc |
10898723 |
T |
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| Q |
355 |
acctgc |
360 |
Q |
| |
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|||||| |
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| T |
10898722 |
acctgc |
10898717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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