View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5695_high_4 (Length: 205)

Name: NF5695_high_4
Description: NF5695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5695_high_4
NF5695_high_4
[»] chr4 (6 HSPs)
chr4 (1-190)||(2877899-2878088)
chr4 (1-170)||(2887422-2887591)
chr4 (1-170)||(2896763-2896932)
chr4 (111-164)||(51049755-51049808)
chr4 (45-162)||(53668549-53668666)
chr4 (3-73)||(51049647-51049717)
[»] chr2 (4 HSPs)
chr2 (3-164)||(44222752-44222913)
chr2 (3-164)||(44210552-44210713)
chr2 (3-164)||(44233574-44233735)
chr2 (45-149)||(43456937-43457041)
[»] chr7 (14 HSPs)
chr7 (3-163)||(39537613-39537773)
chr7 (3-163)||(39547078-39547238)
chr7 (3-172)||(39339083-39339252)
chr7 (45-162)||(42153550-42153667)
chr7 (63-163)||(1084415-1084515)
chr7 (45-162)||(42141748-42141865)
chr7 (3-163)||(39366506-39366666)
chr7 (18-165)||(39574321-39574468)
chr7 (3-172)||(39353926-39354095)
chr7 (3-163)||(39563709-39563869)
chr7 (3-165)||(39588789-39588951)
chr7 (45-162)||(42132579-42132696)
chr7 (45-162)||(42171388-42171505)
chr7 (99-163)||(39621658-39621722)
[»] chr1 (5 HSPs)
chr1 (3-170)||(2160216-2160383)
chr1 (45-165)||(19543262-19543382)
chr1 (3-165)||(2148393-2148555)
chr1 (21-164)||(41687150-41687293)
chr1 (45-166)||(25986620-25986741)
[»] chr5 (1 HSPs)
chr5 (9-160)||(29777435-29777586)
[»] chr8 (2 HSPs)
chr8 (18-164)||(4501718-4501864)
chr8 (45-132)||(43530787-43530874)
[»] chr3 (3 HSPs)
chr3 (1-163)||(49773581-49773743)
chr3 (12-163)||(25522821-25522972)
chr3 (45-162)||(12717006-12717123)
[»] scaffold0210 (1 HSPs)
scaffold0210 (45-162)||(8802-8919)
[»] chr6 (1 HSPs)
chr6 (57-162)||(10901718-10901823)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 2877899 - 2878088
Alignment:
Q  1 ccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2877899 ccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacagg 2877998  T
Q  101 aagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaagaaataatataatgaaatcaacatg 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2877999 aagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaagaaataatataatgaaatcaacatg 2878088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 2887422 - 2887591
Alignment:
Q  1 ccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacagg 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2887422 ccaatccatccataattttcatggatgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacagg 2887521  T
Q  101 aagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaagaaat 170  Q
    ||||||||||||||| |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||    
T  2887522 aagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggtaagaaat 2887591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 2896932 - 2896763
Alignment:
Q  1 ccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacagg 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2896932 ccaatccatccataattttcatggatgagcctacatctggattagatgctagagctgctgcaattgttatgcgaacagttaggaacacggttgacacagg 2896833  T
Q  101 aagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaagaaat 170  Q
    ||||||||||||||| |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||    
T  2896832 aagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggtaagaaat 2896763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 51049755 - 51049808
Alignment:
Q  111 gtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggta 164  Q
    ||||| ||||| ||||||||||||||||| ||||||||  ||||||||||||||    
T  51049755 gtttgcaccatacatcaaccaagtatcgatatatttgagacttttgatgaggta 51049808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 53668666 - 53668549
Alignment:
Q  45 gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat 144  Q
    ||||||||||| ||||| ||||| |||||||| || || ||||| || |||||| | ||||| ||||| || || ||||| |||||||| || || || |    
T  53668666 gatgctagagccgctgctattgtgatgcgaactgtgagaaacacagtagacacatggagaacggttgtgtgcacaattcaccaaccaagcattgatattt 53668567  T
Q  145 ttgaatcttttgatgagg 162  Q
    || || ||||||||||||    
T  53668566 tttaagcttttgatgagg 53668549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 51049647 - 51049717
Alignment:
Q  3 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcg 73  Q
    |||||||| |||||||| ||||| || |||||||| || || |||||| ||||||||||| | ||||||||    
T  51049647 aatccatcgataatttttatggatgaacctacatcaggtttggatgctcgagctgctgcagtagttatgcg 51049717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 4e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 44222913 - 44222752
Alignment:
Q  3 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaa 102  Q
    |||||||| |||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||| || |||||||| || ||||| ||||    
T  44222913 aatccatctataattttcatggatgagcctacttctggtttagatgctagagcggctgcaattgttatgcgaactgtaaggaacacagtggacacgggaa 44222814  T
Q  103 gaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggta 164  Q
    |||||||||| |||||||| |||||||| || || |||||||||||| | ||||||||||||    
T  44222813 gaacagttgtgtgtaccatccatcaacctagcattgacatatttgaagcatttgatgaggta 44222752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 44210713 - 44210552
Alignment:
Q  3 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaa 102  Q
    ||||| ||||||||||||||||| || || || ||||| |||||||||||||||||||||||||||||| |||| || |||||||| || ||||||||||    
T  44210713 aatccgtccataattttcatggatgaaccaacttctggtttagatgctagagctgctgcaattgttatgagaactgtaaggaacacagtggacacaggaa 44210614  T
Q  103 gaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggta 164  Q
    |||||||||| |||||||| |||||||| || || |||||||||||| | ||||||||||||    
T  44210613 gaacagttgtgtgtaccatccatcaacctagcattgacatatttgaagcatttgatgaggta 44210552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 44233735 - 44233574
Alignment:
Q  3 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaa 102  Q
    |||||||| |||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||| || |||||||| || ||||||||||    
T  44233735 aatccatctataatttttatggatgagcctacttctggtttagatgctagagctgctgcaattgttatgagaactgtaaggaacacagtggacacaggaa 44233636  T
Q  103 gaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggta 164  Q
    |||||||||| |||||||| ||||| || || || |||||||||||| | ||||||||||||    
T  44233635 gaacagttgtgtgtaccatccatcagcctagcattgacatatttgaagcatttgatgaggta 44233574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 43457041 - 43456937
Alignment:
Q  45 gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat 144  Q
    ||||| |||||||| |||||||||||| | || || || ||||| |||||||| |||||||||||||| || || ||||| || || |||||||| || |    
T  43457041 gatgcaagagctgcagcaattgttatgaggacagtgagaaacactgttgacactggaagaacagttgtctgcacaattcaccagcctagtatcgatatct 43456942  T
Q  145 ttgaa 149  Q
    |||||    
T  43456941 ttgaa 43456937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 1e-33; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 39537773 - 39537613
Alignment:
Q  3 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaa 102  Q
    ||||| || ||||| |||||||| ||||| || |||||| | ||||| || ||||| || ||||||||| |||| ||||||||||| || ||||| ||||    
T  39537773 aatccttctataatattcatggatgagccaacttctggacttgatgcaagggctgcagctattgttatgagaacagttaggaacacagtagacactggaa 39537674  T
Q  103 gaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt 163  Q
    |||||||||||||||||||||| ||||| || || || |||||||||||||||||||||||    
T  39537673 gaacagttgtttgtaccattcaccaacctagcattgatatatttgaatcttttgatgaggt 39537613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 39547238 - 39547078
Alignment:
Q  3 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaa 102  Q
    ||||| || ||||| |||||||| ||||| || |||||| | ||||| |||||||| || ||||||||| |||| ||||||||||| || ||||| ||||    
T  39547238 aatccttctataatattcatggatgagccaacttctggacttgatgcaagagctgcagctattgttatgagaacagttaggaacacagtagacaccggaa 39547139  T
Q  103 gaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt 163  Q
    ||||||||||||||||||| || || || || || || |||||||||||||||||||||||    
T  39547138 gaacagttgtttgtaccatccaccagcctagcattgatatatttgaatcttttgatgaggt 39547078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 39339083 - 39339252
Alignment:
Q  3 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaa 102  Q
    ||||| || ||||| |||||||| ||||| || |||||  ||||||| || ||||| || ||||||||| |||| ||||||||||| || ||||| ||||    
T  39339083 aatccttcaataatattcatggatgagccaacttctgggctagatgcaagggctgcagctattgttatgagaacagttaggaacacagtagacactggaa 39339182  T
Q  103 gaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaagaaataa 172  Q
    |||||||||||||||| || || || || || || || ||||||||||||||||||||||| | ||||||    
T  39339183 gaacagttgtttgtacaatccaccagcctagcattgatatatttgaatcttttgatgaggtgaaaaataa 39339252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 42153667 - 42153550
Alignment:
Q  45 gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat 144  Q
    ||||||||||| |||||||| |||||||||||||| || || || || || ||||| ||||| |||||||| || ||||||||||||||||| ||||| |    
T  42153667 gatgctagagccgctgcaatcgttatgcgaaccgtgagaaatacagtagatacagggagaactgttgtttgcacaattcatcaaccaagtatagacattt 42153568  T
Q  145 ttgaatcttttgatgagg 162  Q
    ||||| ||||||||||||    
T  42153567 ttgaagcttttgatgagg 42153550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 1084515 - 1084415
Alignment:
Q  63 attgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgagg 162  Q
    ||||||||| |||| ||||||| ||| || ||||| |||||||| |||||||| ||||| |||||||||||||| || ||||||||||||||||||||||    
T  1084515 attgttatgagaacagttaggagcacagtagacactggaagaactgttgtttgcaccatccatcaaccaagtattgatatatttgaatcttttgatgagg 1084416  T
Q  163 t 163  Q
    |    
T  1084415 t 1084415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 42141865 - 42141748
Alignment:
Q  45 gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat 144  Q
    ||||||||||| |||||||| |||||||| ||||| || || || || || ||||| ||||| |||||||| || ||||||||||||||||| ||||| |    
T  42141865 gatgctagagccgctgcaatcgttatgcggaccgtgagaaatacagtggatacagggagaactgttgtttgcacaattcatcaaccaagtatagacattt 42141766  T
Q  145 ttgaatcttttgatgagg 162  Q
    ||||| ||||||||||||    
T  42141765 ttgaagcttttgatgagg 42141748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 39366506 - 39366666
Alignment:
Q  3 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaa 102  Q
    ||||| || ||||| |||||||| ||||| || |||||  ||||||| || ||||| || || || ||| || | ||||||||||| |||||||| ||||    
T  39366506 aatccttcaataatattcatggatgagccaacttctgggctagatgcgagggctgcagctatagtgatgagagcagttaggaacacagttgacaccggaa 39366605  T
Q  103 gaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt 163  Q
    |||| |||||||||||||| || || || || || || |||||||||||||||||||||||    
T  39366606 gaactgttgtttgtaccatccaccagcctagcattgatatatttgaatcttttgatgaggt 39366666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 39574468 - 39574321
Alignment:
Q  18 ttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgta 117  Q
    |||||||| ||||| || ||||| |||||||| |||||||| || ||||||||| || | ||||||||||  || ||||| ||||||||| |||| ||||    
T  39574468 ttcatggatgagccaacttctgggttagatgcaagagctgcagctattgttatgagagcagttaggaacatagtggacactggaagaacaattgtgtgta 39574369  T
Q  118 ccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaa 165  Q
    ||||||| || || || || || || ||||||||||| ||||||||||    
T  39574368 ccattcaccagcccagcattgatatctttgaatctttcgatgaggtaa 39574321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 39353926 - 39354095
Alignment:
Q  3 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaa 102  Q
    ||||| || ||||| |||||||| || || || |||||  ||||||| || ||||| ||| |||| ||| |||| ||||| ||||| || || |||||||    
T  39353926 aatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagcagttgtgatgagaacagttagaaacacagtagatacaggaa 39354025  T
Q  103 gaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaagaaataa 172  Q
    |||||||||||||||| || || || || || || || ||||||||||||||||||||||| | ||||||    
T  39354026 gaacagttgtttgtacaatccaccagcctagcattgatatatttgaatcttttgatgaggtgaaaaataa 39354095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 39563869 - 39563709
Alignment:
Q  3 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaa 102  Q
    ||||| || ||||| |||||||| || || || |||||  ||||||| || ||||| || ||||| ||| |||| ||||||||||| ||  |||| ||||    
T  39563869 aatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaa 39563770  T
Q  103 gaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt 163  Q
    |||||||||||||||| || || || || || || || |||||||||||||||||||||||    
T  39563769 gaacagttgtttgtactatccaccagcctagcattgatatatttgaatcttttgatgaggt 39563709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 39588951 - 39588789
Alignment:
Q  3 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaa 102  Q
    ||||| || ||||| |||||||| ||||| || || ||  ||||||| || |||||  | ||||||||| || | ||||| ||||  || ||||||||||    
T  39588951 aatccttctataatattcatggatgagccaacttcggggctagatgcaagggctgcatctattgttatgagagcagttagaaacatagtggacacaggaa 39588852  T
Q  103 gaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaa 165  Q
    ||||| ||||||||||||||||||| || || ||  | ||||||||||||||||| |||||||    
T  39588851 gaacaattgtttgtaccattcatcagcccagcattcatatatttgaatcttttgacgaggtaa 39588789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 42132696 - 42132579
Alignment:
Q  45 gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat 144  Q
    ||||||||||| ||||| ||||| |||||||| || || ||||| || |||||||| ||||| ||||| || || ||||| |||||||| || || || |    
T  42132696 gatgctagagccgctgccattgtgatgcgaactgtgagaaacacagtagacacagggagaactgttgtgtgcacaattcaccaaccaagcattgatattt 42132597  T
Q  145 ttgaatcttttgatgagg 162  Q
    ||||| ||||||||||||    
T  42132596 ttgaagcttttgatgagg 42132579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 42171505 - 42171388
Alignment:
Q  45 gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat 144  Q
    ||||||||||| ||||| ||||||||||| ||||| || || || || || ||||| ||||| |||||||| || |||||||||||||| |  || || |    
T  42171505 gatgctagagccgctgctattgttatgcggaccgtgagaaatacagtagatacagggagaactgttgtttgcacaattcatcaaccaagcacggatattt 42171406  T
Q  145 ttgaatcttttgatgagg 162  Q
    ||||| ||||||||||||    
T  42171405 ttgaagcttttgatgagg 42171388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 39621722 - 39621658
Alignment:
Q  99 ggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt 163  Q
    |||||||| ||||| ||| ||||||||||| ||| ||| || |||||||||||||||||||||||    
T  39621722 ggaagaactgttgtctgtgccattcatcaatcaaatattgatatatttgaatcttttgatgaggt 39621658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 2160383 - 2160216
Alignment:
Q  3 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaa 102  Q
    |||||||| ||||| |||||||| ||||| || |||||  | ||||||||||| ||||||||||| ||| |||| || |||||||| ||||||||||||     
T  2160383 aatccatcgataatattcatggatgagccaacctctggccttgatgctagagcagctgcaattgtaatgagaacagtgaggaacacagttgacacaggac 2160284  T
Q  103 gaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaagaaat 170  Q
    | || |||||||| || || ||||| |||||||| |||||||| ||  | ||||||||||||| ||||    
T  2160283 gtactgttgtttgcacaatccatcagccaagtattgacatattcgacgcctttgatgaggtaacaaat 2160216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 19543262 - 19543382
Alignment:
Q  45 gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat 144  Q
    |||||||||||||| ||| | |||||||| || ||||| ||||| ||||| ||||| ||||| ||||| || || ||||||||||||||||| || || |    
T  19543262 gatgctagagctgcagcagtagttatgcgtactgttagaaacacagttgatacagggagaactgttgtgtgcacaattcatcaaccaagtattgatattt 19543361  T
Q  145 ttgaatcttttgatgaggtaa 165  Q
    |||||  ||||||||||||||    
T  19543362 ttgaaaattttgatgaggtaa 19543382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 2148555 - 2148393
Alignment:
Q  3 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaa 102  Q
    |||||||| ||||| |||||||| || || || |||||  | |||||| |||| ||||| ||||| |||||||| || |||||||| || |||||||||     
T  2148555 aatccatcgataatattcatggatgaaccaacctctggcctggatgctcgagcagctgcgattgtaatgcgaacagtaaggaacactgtggacacaggac 2148456  T
Q  103 gaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaa 165  Q
    | || || || || || || ||||| || ||||| ||||||||||| || |||||||||||||    
T  2148455 gtaccgtggtgtgcacgatccatcagccgagtattgacatatttgattcctttgatgaggtaa 2148393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 41687293 - 41687150
Alignment:
Q  21 atggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtacca 120  Q
    ||||| ||||||||||| ||  | ||||| |||||||| |||||||||||||| || || || || || |  || ||||| ||||| || || || || |    
T  41687293 atggatgagcctacatcaggccttgatgccagagctgcagcaattgttatgcgtactgtcagaaatacagcggatacagggagaactgtggtctgcacaa 41687194  T
Q  121 ttcatcaaccaagtatcgacatatttgaatcttttgatgaggta 164  Q
    |||| |||||||| || || ||||||||||||||||||||||||    
T  41687193 ttcaccaaccaagcattgatatatttgaatcttttgatgaggta 41687150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 25986741 - 25986620
Alignment:
Q  45 gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat 144  Q
    ||||||||||| ||||| ||||  |||||||| || || |||||||| |||||||| ||||| ||||| || || ||||| |||||||| || || || |    
T  25986741 gatgctagagccgctgctattgagatgcgaactgtgagaaacacggtagacacagggagaactgttgtgtgcacaattcaccaaccaagcattgatattt 25986642  T
Q  145 ttgaatcttttgatgaggtaag 166  Q
    || || ||||||||||| ||||    
T  25986641 tttaagcttttgatgagataag 25986620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 29777435 - 29777586
Alignment:
Q  9 tccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacag 108  Q
    ||||| ||||| ||||||||||||||||||||| | |||||| | || || || || ||||||||||| ||| | ||||| ||||| || |||||||| |    
T  29777435 tccattatttttatggacgagcctacatctggacttgatgctcgtgccgcagctatcgttatgcgaactgttcgcaacactgttgatactggaagaactg 29777534  T
Q  109 ttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatga 160  Q
    |||| |||||||| |||||||||||||| || || |||||| | ||||||||    
T  29777535 ttgtctgtaccatacatcaaccaagtattgatatttttgaagcatttgatga 29777586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 4501718 - 4501864
Alignment:
Q  18 ttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgta 117  Q
    |||||||| ||||| || |||||  ||||||| ||||| ||||| ||||||||| | || || || ||||| ||||| || |||||||||||||| || |    
T  4501718 ttcatggatgagccaacttctggtctagatgcaagagcagctgctattgttatgaggactgtaagaaacactgttgatactggaagaacagttgtgtgca 4501817  T
Q  118 ccattcatcaaccaagtatcgacatatttgaatcttttgatgaggta 164  Q
    | ||||||||||| || || || || |||||| | ||||||||||||    
T  4501818 caattcatcaacctagcattgatatctttgaagcctttgatgaggta 4501864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 43530787 - 43530874
Alignment:
Q  45 gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaa 132  Q
    |||||||||||||| ||| | |||||||| || ||||| ||||| ||||  ||||| ||||| ||||| || || |||||||||||||    
T  43530787 gatgctagagctgcagcagtagttatgcgtactgttagaaacacagttgttacagggagaactgttgtgtgcacaattcatcaaccaa 43530874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 49773581 - 49773743
Alignment:
Q  1 ccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacagg 100  Q
    |||||||||| || || |||||||| || ||||| |||||  | ||||| ||||||||||| || || ||| |||| || ||||| || || ||||||||    
T  49773581 ccaatccatctattatattcatggatgaacctacctctggccttgatgcaagagctgctgctatagtaatgagaacagtgaggaatacagtggacacagg 49773680  T
Q  101 aagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt 163  Q
     ||||| ||||| || || |||||||| || ||||| || ||||||||  |||||||||||||    
T  49773681 gagaactgttgtctgcacaattcatcagcctagtattgatatatttgatgcttttgatgaggt 49773743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 25522972 - 25522821
Alignment:
Q  12 ataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttg 111  Q
    ||||| |||||||| || ||||| || ||| | |||||  | || ||||| ||||||||| |||| ||| | || || ||||| || |||||||| || |    
T  25522972 ataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgttgatactggaagaactgtgg 25522873  T
Q  112 tttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt 163  Q
    |||||||||| ||||| |||||||| || ||||||||| | |||||||||||    
T  25522872 tttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 25522821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 12717123 - 12717006
Alignment:
Q  45 gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat 144  Q
    ||||||||||| ||||| ||||| ||| |||| || || ||||| || |||||||| ||||| ||||| || || ||||| |||||||| || || || |    
T  12717123 gatgctagagccgctgctattgtgatgtgaactgtgagaaacacagtagacacagggagaactgttgtgtgcacaattcaccaaccaagcattgatattt 12717024  T
Q  145 ttgaatcttttgatgagg 162  Q
    || || ||||||||||||    
T  12717023 tttaagcttttgatgagg 12717006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 162
Target Start/End: Original strand, 8802 - 8919
Alignment:
Q  45 gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat 144  Q
    ||||||||||||||||| ||||| |||||||| || || ||||| || |||||||| ||||  ||||| || || ||||| ||||||||||| || || |    
T  8802 gatgctagagctgctgctattgtgatgcgaactgtgagaaacacagtagacacagggagaaatgttgtgtgcacaattcaccaaccaagtattgatattt 8901  T
Q  145 ttgaatcttttgatgagg 162  Q
    || || ||||||||||||    
T  8902 tttaagcttttgatgagg 8919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 10901823 - 10901718
Alignment:
Q  57 gctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttg 156  Q
    ||||| ||||| ||| |||| || || ||||| || |||||||||||||| ||||| || || ||||| |||||||| || || || ||| || ||||||    
T  10901823 gctgctattgtgatgtgaactgtgagaaacacagtagacacaggaagaactgttgtgtgcacaattcaccaaccaagcattgatattttttaagcttttg 10901724  T
Q  157 atgagg 162  Q
    ||||||    
T  10901723 atgagg 10901718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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