View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5695_low_1 (Length: 939)

Name: NF5695_low_1
Description: NF5695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5695_low_1
NF5695_low_1
[»] chr4 (7 HSPs)
chr4 (1-939)||(2878065-2879003)
chr4 (498-756)||(2888064-2888322)
chr4 (498-757)||(2896044-2896303)
chr4 (270-411)||(2896357-2896498)
chr4 (250-411)||(2887836-2887997)
chr4 (104-176)||(2896594-2896666)
chr4 (112-176)||(2887692-2887756)
[»] chr2 (9 HSPs)
chr2 (515-753)||(44209788-44210026)
chr2 (556-738)||(44221998-44222180)
chr2 (556-738)||(44232824-44233006)
chr2 (264-353)||(44222383-44222472)
chr2 (271-410)||(44210125-44210264)
chr2 (271-410)||(44233146-44233285)
chr2 (102-176)||(44233375-44233449)
chr2 (96-176)||(44222555-44222635)
chr2 (80-171)||(44210359-44210450)
[»] chr7 (1 HSPs)
chr7 (614-660)||(39563086-39563132)


Alignment Details
Target: chr4 (Bit Score: 903; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 903; E-Value: 0
Query Start/End: Original strand, 1 - 939
Target Start/End: Original strand, 2878065 - 2879003
Alignment:
Q  1 aaataatataatgaaatcaacatgtttatgaaaatttctttgctcatgtggactcaaatataatatatgttacatgtgattctagttattcttgttgaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878065 aaataatataatgaaatcaacatgtttatgaaaatttctttgctcatgtgaactcaaatataatatatgttacatgtgattctagttattcttgttgaag 2878164  T
Q  101 agtggaggacgagaaatatatgctgggccattaggtcgttattctaatcaattgatcaagtactttgaggttggatttggatgcaacttaaattcaattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878165 agtggaggacgagaaatatatgctgggccattaggtcgttattctaatcaattgatcaagtactttgaggttggatttggatgcaacttaaattcaattt 2878264  T
Q  201 tatttcaacaagtgaagaaccataattcttgaatcaccatttactaattttcttatattttctattgtctagagtattgaaggagtaagtaaaataaacg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878265 tatttcaacaagtgaagaaccataattcttgaatcaccatttactaattttcttatattttctattgtctagagtattgaaggagtaagtaaaataaacg 2878364  T
Q  301 atggatataacccagcaacatggatgttagaagtgacaagtccagcacaagaagttgcattaggtgttgattttcatgagatatacaaaaattctgagct 400  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2878365 atggatataacccagcaacatggatgttagaagtgacgagtccagcacaagaagttgcattaggtgctgattttcatgagatatacaaaaattctgagct 2878464  T
Q  401 atataggtaagaaataatatacaatactattatatgaatcagggtatgaatttgttaaatgtagtacctgcagtaatcatattcagaaaaggctttgact 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2878465 atataggtaagaaataatatacaatactattatatgaatcagggtatgaatttgttaaatgtagtacctgcagtaatcatattcagaaaaggctttaact 2878564  T
Q  501 gttatacactattattcaggagaaataagcaactgatagaagaatttgggaaacttgctcttggttccaaggatctttatttccctagccaatactcaca 600  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2878565 gttatacactattgttcaggagaaataagcaacttatagaagaattgggaaaacctgctcttggttccaaggatctttatttccctagccaatactcaca 2878664  T
Q  601 atcatttttagttcaatgcttggcttgcttgtggaaacaacgttggtcatattggcgcaacccgttatacactgctgttaggttttactttgctactttc 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878665 atcatttttagttcaatgcttggcttgcttgtggaaacaacgttggtcatattggcgcaacccgttatacactgctgttaggttttactttgctactttc 2878764  T
Q  701 atagcattgatgtttggaacaatgttttgggacctcggacgcaaatagtaagtgaaaacttccaaaatctataaatatgacaatagcttattgaatttgc 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878765 atagcattgatgtttggaacaatgttttgggacctcggacgcaaatagtaagtgaaaacttccaaaatctataaatatgacaatagcttattgaatttgc 2878864  T
Q  801 acttaatcaaaatatttatccaaacaccgtttagttgatatttcatttccacttgaattgtgatgcctttcgtggattccagcacaagaggactagacct 900  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878865 acttaatcaaaatatttatccaaacaccgtttagttgatatttcatttccacttgaattgtgatgcctttcgtggattccagcacaagaggactagacct 2878964  T
Q  901 gtctaatgccatgggctcaatgtacactgctgttttctt 939  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2878965 gtctaatgccatgggctcaatgtacactgctgttttctt 2879003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 498 - 756
Target Start/End: Original strand, 2888064 - 2888322
Alignment:
Q  498 actgttatacactattattcaggagaaataagcaactgatagaagaatttgggaaacttgctcttggttccaaggatctttatttccctagccaatactc 597  Q
    ||||||||| |||||| ||||||||||| |||||||| ||||||||||| || |||| ||| | |||||| || |||||||||||| ||  |||||||||    
T  2888064 actgttataaactattgttcaggagaaacaagcaacttatagaagaattaggcaaacctgcacctggttcaaatgatctttatttctctgcccaatactc 2888163  T
Q  598 acaatcatttttagttcaatgcttggcttgcttgtggaaacaacgttggtcatattggcgcaacccgttatacactgctgttaggttttactttgctact 697  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||||  ||||||| |||| ||||||| |||  ||  |    
T  2888164 acaatcatttttagtccaatgtttggcttgcttatggaaacaacattggtcatattggcgcaacccgccatacacttctgtgaggtttttcttcactgtt 2888263  T
Q  698 ttcatagcattgatgtttggaacaatgttttgggacctcggacgcaaatagtaagtgaa 756  Q
    |||||||  ||||||||||||||||| |||||||| || ||| | ||||||||||||||    
T  2888264 ttcataggcttgatgtttggaacaatattttgggatcttggaaggaaatagtaagtgaa 2888322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 498 - 757
Target Start/End: Complemental strand, 2896303 - 2896044
Alignment:
Q  498 actgttatacactattattcaggagaaataagcaactgatagaagaatttgggaaacttgctcttggttccaaggatctttatttccctagccaatactc 597  Q
    |||| |||| |||||| || |||||||| |||||||| |||| |||||| || |||| ||||| |||||| ||||||||| ||||| |   |||||||||    
T  2896303 actgatataaactattctttaggagaaacaagcaacttatagtagaattaggcaaacctgctcctggttctaaggatcttcatttctccgcccaatactc 2896204  T
Q  598 acaatcatttttagttcaatgcttggcttgcttgtggaaacaacgttggtcatattggcgcaacccgttatacactgctgttaggttttactttgctact 697  Q
    |||||||||||   | ||||||||||||||| | |||||||||| ||||||||| |||||||| |||  |||||||||||| ||||||| |||  |||||    
T  2896203 acaatcattttggatccaatgcttggcttgcctatggaaacaacattggtcatactggcgcaatccgccatacactgctgtgaggtttttcttcactact 2896104  T
Q  698 ttcatagcattgatgtttggaacaatgttttgggacctcggacgcaaatagtaagtgaaa 757  Q
    ||||||||||||||||||||||||||||| ||| |||| ||| | |||||||||||||||    
T  2896103 ttcatagcattgatgtttggaacaatgttctggaaccttggaaggaaatagtaagtgaaa 2896044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 270 - 411
Target Start/End: Complemental strand, 2896498 - 2896357
Alignment:
Q  270 tagagtattgaaggagtaagtaaaataaacgatggatataacccagcaacatggatgttagaagtgacaagtccagcacaagaagttgcattaggtgttg 369  Q
    ||||| || ||||| || |||||||| || ||||| ||||| |||||||| |||||||| ||||| |||||| |||||||||||  | | ||||||||||    
T  2896498 tagagcatcgaaggggttagtaaaattaaagatggctataatccagcaacttggatgttggaagttacaagttcagcacaagaacatactttaggtgttg 2896399  T
Q  370 attttcatgagatatacaaaaattctgagctatataggtaag 411  Q
    |||||||||| |||||||||||||||||| | || |||||||    
T  2896398 attttcatgatatatacaaaaattctgagttgtacaggtaag 2896357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 250 - 411
Target Start/End: Original strand, 2887836 - 2887997
Alignment:
Q  250 ttcttatattttctattgtctagagtattgaaggagtaagtaaaataaacgatggatataacccagcaacatggatgttagaagtgacaagtccagcaca 349  Q
    |||| ||||||||| |||| ||||| |||||||| || |||||||| || ||||| ||||| |||||||| |||||||| |||||  | ||| |||||||    
T  2887836 ttctaatattttctgttgtttagagcattgaaggggttagtaaaatcaaagatggctataatccagcaacttggatgttggaagtttcgagttcagcaca 2887935  T
Q  350 agaagttgcattaggtgttgattttcatgagatatacaaaaattctgagctatataggtaag 411  Q
    |||| || |  ||||  ||||||||||| |   |||||||||||||||| | || |||||||    
T  2887936 agaacttactctaggaattgattttcatcatgcatacaaaaattctgagttgtacaggtaag 2887997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 2896666 - 2896594
Alignment:
Q  104 ggaggacgagaaatatatgctgggccattaggtcgttattctaatcaattgatcaagtactttgaggttggat 176  Q
    ||||||| ||||| ||||| ||||||||| |||||| |||| ||||||||||||||||| |||||||||||||    
T  2896666 ggaggacaagaaacatatgttgggccattgggtcgtcattccaatcaattgatcaagtattttgaggttggat 2896594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 2887692 - 2887756
Alignment:
Q  112 agaaatatatgctgggccattaggtcgttattctaatcaattgatcaagtactttgaggttggat 176  Q
    ||||||||||| ||| ||  | |||||| |||||| ||||||||||||||| |||||||||||||    
T  2887692 agaaatatatgttggaccgctgggtcgtcattctagtcaattgatcaagtattttgaggttggat 2887756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 515 - 753
Target Start/End: Complemental strand, 44210026 - 44209788
Alignment:
Q  515 ttcaggagaaataagcaactgatagaagaatttgggaaacttgctcttggttccaaggatctttatttccctagccaatactcacaatcatttttagttc 614  Q
    ||||||||||| |||||||| ||  ||||| ||||    | ||||| |||||| ||||||||| |||||||||  |||| ||| || || || || || |    
T  44210026 ttcaggagaaacaagcaacttattcaagaacttggcgtgcctgctcctggttcaaaggatcttcatttccctactcaattctcgcagtctttcttggtcc 44209927  T
Q  615 aatgcttggcttgcttgtggaaacaacgttggtcatattggcgcaacccgttatacactgctgttaggttttactttgctactttcatagcattgatgtt 714  Q
    |||||  ||| ||||| |||||||||||||||||||||||||| || ||   |||||||||||| ||||||| |||  | || |||||||| ||||||||    
T  44209926 aatgccaggcctgcttatggaaacaacgttggtcatattggcgtaatccaccatacactgctgtgaggtttttcttcacgacattcatagccttgatgtt 44209827  T
Q  715 tggaacaatgttttgggacctcggacgcaaatagtaagt 753  Q
    |||||||||||| |||||||||||  ||||| |||||||    
T  44209826 tggaacaatgttctgggacctcggtggcaaacagtaagt 44209788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 556 - 738
Target Start/End: Complemental strand, 44222180 - 44221998
Alignment:
Q  556 tgctcttggttccaaggatctttatttccctagccaatactcacaatcatttttagttcaatgcttggcttgcttgtggaaacaacgttggtcatattgg 655  Q
    ||||| |||||| ||||||||| |||||||||  |||| ||| || || || || |||||||||  ||| ||||| ||||||||||||||||||||||||    
T  44222180 tgctcctggttcaaaggatcttcatttccctactcaattctcgcagtctttcttggttcaatgccaggcctgcttatggaaacaacgttggtcatattgg 44222081  T
Q  656 cgcaacccgttatacactgctgttaggttttactttgctactttcatagcattgatgtttggaacaatgttttgggacctcgg 738  Q
    || || ||   |||||||||||| ||||||| |||  |||| |||||||  |||||||||||||||||||| |||||||||||    
T  44222080 cgtaatccaccatacactgctgtgaggtttttcttcactaccttcataggcttgatgtttggaacaatgttctgggacctcgg 44221998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 556 - 738
Target Start/End: Complemental strand, 44233006 - 44232824
Alignment:
Q  556 tgctcttggttccaaggatctttatttccctagccaatactcacaatcatttttagttcaatgcttggcttgcttgtggaaacaacgttggtcatattgg 655  Q
    ||||| |||||| ||||||||| |||||||||  |||| ||| || || || || || ||||||  ||| ||||| ||||||||||||||||||||||||    
T  44233006 tgctcctggttcaaaggatcttcatttccctactcaattctcgcagtctttcttggtccaatgccaggcctgcttatggaaacaacgttggtcatattgg 44232907  T
Q  656 cgcaacccgttatacactgctgttaggttttactttgctactttcatagcattgatgtttggaacaatgttttgggacctcgg 738  Q
    || || ||   |||||||||||| ||||||| |||  |||| |||||||  |||||||||||||||||||| |||||||||||    
T  44232906 cgtaatccaccatacactgctgtgaggtttttcttcactacattcataggcttgatgtttggaacaatgttctgggacctcgg 44232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 264 - 353
Target Start/End: Complemental strand, 44222472 - 44222383
Alignment:
Q  264 attgtctagagtattgaaggagtaagtaaaataaacgatggatataacccagcaacatggatgttagaagtgacaagtccagcacaagaa 353  Q
    |||||| |||| ||||| ||||| |||||||| || ||||||||||||||||||||||||||||| ||||| |||| | |||||||||||    
T  44222472 attgtccagagcattgacggagttagtaaaatcaaagatggatataacccagcaacatggatgttggaagttacaactacagcacaagaa 44222383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 44210264 - 44210125
Alignment:
Q  271 agagtattgaaggagtaagtaaaataaacgatggatataacccagcaacatggatgttagaagtgacaagtccagcacaagaagttgcattaggtgttga 370  Q
    |||| ||||| ||||| |||||||| || || |||||||||||||||||||||||||| ||||| |||| | | ||||||||| ||   || ||||||||    
T  44210264 agagcattgacggagtgagtaaaatcaaagacggatataacccagcaacatggatgttggaagttacaactaccgcacaagaacttaatttgggtgttga 44210165  T
Q  371 ttttcatgagatatacaaaaattctgagctatataggtaa 410  Q
    ||||   ||  | ||||||||||| || ||||||||||||    
T  44210164 ttttaccgatttgtacaaaaattcagatctatataggtaa 44210125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 44233285 - 44233146
Alignment:
Q  271 agagtattgaaggagtaagtaaaataaacgatggatataacccagcaacatggatgttagaagtgacaagtccagcacaagaagttgcattaggtgttga 370  Q
    |||| ||||| ||||| |||||||| || || |||||||||||||||||||||||||| ||||| |||| | | ||||||||| ||   || || |||||    
T  44233285 agagcattgacggagtgagtaaaatcaaagacggatataacccagcaacatggatgttggaagttacaactaccgcacaagaacttaatttgggcgttga 44233186  T
Q  371 ttttcatgagatatacaaaaattctgagctatataggtaa 410  Q
    |||   |||  | |||||||||||||| ||||||||||||    
T  44233185 tttcactgacttgtacaaaaattctgatctatataggtaa 44233146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 44233449 - 44233375
Alignment:
Q  102 gtggaggacgagaaatatatgctgggccattaggtcgttattctaatcaattgatcaagtactttgaggttggat 176  Q
    ||||||||| ||||||||||| ||| ||||| |||||| |||||| ||| ||||||||||| |||||||| ||||    
T  44233449 gtggaggacaagaaatatatgttggaccattgggtcgtcattctactcatttgatcaagtattttgaggtaggat 44233375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 44222635 - 44222555
Alignment:
Q  96 tgaagagtggaggacgagaaatatatgctgggccattaggtcgttattctaatcaattgatcaagtactttgaggttggat 176  Q
    ||||| ||||||||| ||||||||||| ||| ||| | |||||| |||||| ||| ||||||||||| || ||||| ||||    
T  44222635 tgaagcgtggaggacaagaaatatatgttggaccactgggtcgtcattctactcatttgatcaagtatttcgaggtaggat 44222555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 44210450 - 44210359
Alignment:
Q  80 ttctagttattcttgttgaagagtggaggacgagaaatatatgctgggccattaggtcgttattctaatcaattgatcaagtactttgaggt 171  Q
    |||||||||||| |  ||||  |||||||||  |||||||||| ||| ||||| |||||| |||||| ||| ||||||||||| || |||||    
T  44210450 ttctagttattccttatgaaacgtggaggacaggaaatatatgttggaccattgggtcgtcattctactcatttgatcaagtatttcgaggt 44210359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 614 - 660
Target Start/End: Complemental strand, 39563132 - 39563086
Alignment:
Q  614 caatgcttggcttgcttgtggaaacaacgttggtcatattggcgcaa 660  Q
    |||||| |||||||||| |||||||||| |||||| |||||||||||    
T  39563132 caatgcatggcttgcttatggaaacaacattggtcttattggcgcaa 39563086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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