View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5695_low_2 (Length: 294)

Name: NF5695_low_2
Description: NF5695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5695_low_2
NF5695_low_2
[»] chr6 (4 HSPs)
chr6 (138-289)||(10007103-10007254)
chr6 (15-137)||(10007013-10007135)
chr6 (25-137)||(10000326-10000438)
chr6 (48-119)||(10014646-10014717)
[»] chr3 (2 HSPs)
chr3 (247-282)||(4252526-4252561)
chr3 (246-288)||(40777051-40777093)
[»] chr1 (2 HSPs)
chr1 (247-282)||(39714780-39714815)
chr1 (230-274)||(44486167-44486211)
[»] chr2 (1 HSPs)
chr2 (249-282)||(18825382-18825415)
[»] chr8 (1 HSPs)
chr8 (247-287)||(22268930-22268970)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 138 - 289
Target Start/End: Original strand, 10007103 - 10007254
Alignment:
Q  138 tggatgaaacaggaaattgagcaccaaggtaccatttatcagcaaatcaaatggtaagtttattcccataaacttacttaggttgatttgaaggtgttgg 237  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10007103 tggatgaaaccggaaattgagcaccaaggtaccatttatcagcaaatcaaagggtaagtttattcccataaacttacttaggttgatttgaagctgttgg 10007202  T
Q  238 tttagaaaattggagtgtcctcctctcaaggtctcaagtttgattatctctg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10007203 tttagaaaattggagtgtcctcctctcaaggtctcaagtttgattatctctg 10007254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 10007013 - 10007135
Alignment:
Q  15 aaatttatcaatcattagggccttgtaagacttcaattagttgagtggttcacatatttccaaatattgctatagagaatgaaatcaaaatggatgaaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10007013 aaatttatcaatcattagggccttgtaagacttcaattagttgagtggttcacatatttccaaatattgctatagagaatgaaatcaaaatggatgaaac 10007112  T
Q  115 atgaaattgtgcaccaatgtacc 137  Q
      ||||||| ||||||| |||||    
T  10007113 cggaaattgagcaccaaggtacc 10007135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 10000326 - 10000438
Alignment:
Q  25 atcattagggccttgtaagacttcaattagttgagtggttcacatatttccaaatattgctatagagaatgaaatcaaaatggatgaaacatgaaattgt 124  Q
    ||||||||||||| ||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  10000326 atcattagggcctggtaaggctacaattagttgagtggttcacaaatttcaaaatattgctatagagaatgaaatcaaaatggatgaaacatgaaattga 10000425  T
Q  125 gcaccaatgtacc 137  Q
    || | ||||||||    
T  10000426 gctctaatgtacc 10000438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 10014646 - 10014717
Alignment:
Q  48 caattagttgagtggttcacatatttccaaatattgctatagagaatgaaatcaaaatggatgaaacatgaa 119  Q
    ||||||||||  ||||||| | ||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  10014646 caattagttgcctggttcatagattacaaaatattgttatagagaatgaaatcaaaatggatgaaccatgaa 10014717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 4252561 - 4252526
Alignment:
Q  247 ttggagtgtcctcctctcaaggtctcaagtttgatt 282  Q
    ||||||||| ||||||||||||||||||||||||||    
T  4252561 ttggagtgtgctcctctcaaggtctcaagtttgatt 4252526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 40777051 - 40777093
Alignment:
Q  246 attggagtgtcctcctctcaaggtctcaagtttgattatctct 288  Q
    |||||||||| ||||||||||||||||| |||||||| |||||    
T  40777051 attggagtgtgctcctctcaaggtctcaggtttgattctctct 40777093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 39714815 - 39714780
Alignment:
Q  247 ttggagtgtcctcctctcaaggtctcaagtttgatt 282  Q
    ||||||||| ||||||||||||||||||||||||||    
T  39714815 ttggagtgtgctcctctcaaggtctcaagtttgatt 39714780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 44486211 - 44486167
Alignment:
Q  230 ggtgttggtttagaaaattggagtgtcctcctctcaaggtctcaa 274  Q
    ||||||||||| |||  ||||||||| ||||||||||||||||||    
T  44486211 ggtgttggtttggaaccttggagtgtgctcctctcaaggtctcaa 44486167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 282
Target Start/End: Original strand, 18825382 - 18825415
Alignment:
Q  249 ggagtgtcctcctctcaaggtctcaagtttgatt 282  Q
    ||||||| ||||||||||||||||||||||||||    
T  18825382 ggagtgtgctcctctcaaggtctcaagtttgatt 18825415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 22268970 - 22268930
Alignment:
Q  247 ttggagtgtcctcctctcaaggtctcaagtttgattatctc 287  Q
    ||||||||| ||| |||||||||||||||||||||| ||||    
T  22268970 ttggagtgtgctcttctcaaggtctcaagtttgattttctc 22268930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University