View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5695_low_3 (Length: 293)

Name: NF5695_low_3
Description: NF5695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5695_low_3
NF5695_low_3
[»] chr3 (15 HSPs)
chr3 (185-278)||(30489992-30490085)
chr3 (13-119)||(30489818-30489925)
chr3 (13-119)||(30520634-30520741)
chr3 (11-81)||(30485859-30485929)
chr3 (13-81)||(30516421-30516489)
chr3 (16-81)||(30491920-30491985)
chr3 (11-81)||(30505644-30505714)
chr3 (19-81)||(30450115-30450177)
chr3 (19-81)||(30508872-30508934)
chr3 (185-278)||(30520808-30520893)
chr3 (18-76)||(31830043-31830101)
chr3 (28-74)||(30453846-30453892)
chr3 (90-119)||(30483900-30483929)
chr3 (90-119)||(30503986-30504015)
chr3 (13-76)||(30487649-30487713)
[»] chr4 (1 HSPs)
chr4 (13-119)||(17856367-17856469)
[»] chr6 (2 HSPs)
chr6 (23-75)||(10594641-10594693)
chr6 (25-73)||(6175932-6175980)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 30489992 - 30490085
Alignment:
Q  185 gacataaacctttgcggttttataatgagttaattaggaagaagacatgaagtagaatgatatgggtactactgttgttgggatctaaatgatg 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30489992 gacataaacctttgcggttttataatgagttaattaggaagaagacatgaagtagaatgatatgggtactactgtggttgggatctaaatgatg 30490085  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 30489818 - 30489925
Alignment:
Q  13 aatatggtggatttgttgtaattgggcattggccagacaactgtagagatggaatccacagatgttgag-nnnnnnnngtctcaccattctactaattcc 111  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  30489818 aatatggtggatttgttgtaattgggcattggccagacaaccgtagagatggaatccacagatgttgagtttttttttgtctcaccattctactaattcc 30489917  T
Q  112 atctcaca 119  Q
    ||||||||    
T  30489918 atctcaca 30489925  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 30520634 - 30520741
Alignment:
Q  13 aatatggtggatttgttgtaattgggcattggccagacaactgtagagatggaatccacagatgttga-gnnnnnnnngtctcaccattctactaattcc 111  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |        ||||||||||||||||||||||    
T  30520634 aatatggtggatttgttgtaattgggcagtggccagacaaccgtagagatggaatccacagatgttgaggtttttcttgtctcaccattctactaattcc 30520733  T
Q  112 atctcaca 119  Q
    ||||||||    
T  30520734 atctcaca 30520741  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 30485859 - 30485929
Alignment:
Q  11 agaatatggtggatttgttgtaattgggcattggccagacaactgtagagatggaatccacagatgttgag 81  Q
    ||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  30485859 agaatatggtggatttgttgtaattgggcagcggccagacaaccgtagagatggaatccacagatgttgag 30485929  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 30516421 - 30516489
Alignment:
Q  13 aatatggtggatttgttgtaattgggcattggccagacaactgtagagatggaatccacagatgttgag 81  Q
    ||||||||||||||||||||||||| ||  ||||||||||| |||||||||||||||||||||||||||    
T  30516421 aatatggtggatttgttgtaattggacagcggccagacaaccgtagagatggaatccacagatgttgag 30516489  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 30491920 - 30491985
Alignment:
Q  16 atggtggatttgttgtaattgggcattggccagacaactgtagagatggaatccacagatgttgag 81  Q
    ||||||| |||||||||||||||||  ||||||||||| ||||||||||||||||||||| |||||    
T  30491920 atggtgggtttgttgtaattgggcagcggccagacaaccgtagagatggaatccacagatcttgag 30491985  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 30505644 - 30505714
Alignment:
Q  11 agaatatggtggatttgttgtaattgggcattggccagacaactgtagagatggaatccacagatgttgag 81  Q
    ||||||||||||||||||||||||| ||||  |||  |||||| || ||||||||||||||||||||||||    
T  30505644 agaatatggtggatttgttgtaattcggcagcggctcgacaaccgtggagatggaatccacagatgttgag 30505714  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 30450115 - 30450177
Alignment:
Q  19 gtggatttgttgtaattgggcattggccagacaactgtagagatggaatccacagatgttgag 81  Q
    |||||| ||||| ||||| |||  ||||||||||| |||||||||||||||||||||||||||    
T  30450115 gtggatctgttgaaattgagcagcggccagacaaccgtagagatggaatccacagatgttgag 30450177  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 30508872 - 30508934
Alignment:
Q  19 gtggatttgttgtaattgggcattggccagacaactgtagagatggaatccacagatgttgag 81  Q
    |||| ||||||||||||||| |  ||||||||||| ||||||||||||||||||||| |||||    
T  30508872 gtgggtttgttgtaattgggaagcggccagacaaccgtagagatggaatccacagatcttgag 30508934  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 30520808 - 30520893
Alignment:
Q  185 gacataaacctttgcggttttataatgagttaattaggaagaagacatgaagtagaatgatatgggtactactgttgttgggatctaaatgatg 278  Q
    |||||||||||||||||||||     ||||||| |||||||||||||| ||||||| ||| |||||   ||||||  |||||||||||||||||    
T  30520808 gacataaacctttgcggtttt-----gagttaactaggaagaagacataaagtagagtgacatggg---tactgtgtttgggatctaaatgatg 30520893  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 31830043 - 31830101
Alignment:
Q  18 ggtggatttgttgtaattgggcattggccagacaactgtagagatggaatccacagatg 76  Q
    ||||| |||||| ||||| ||||  ||||||||||| ||||||||||||||||||||||    
T  31830043 ggtgggtttgttataattaggcagcggccagacaaccgtagagatggaatccacagatg 31830101  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 30453846 - 30453892
Alignment:
Q  28 ttgtaattgggcattggccagacaactgtagagatggaatccacaga 74  Q
    |||||| ||||||  ||||||||||| ||||||||||||||||||||    
T  30453846 ttgtaagtgggcagcggccagacaaccgtagagatggaatccacaga 30453892  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 30483900 - 30483929
Alignment:
Q  90 gtctcaccattctactaattccatctcaca 119  Q
    ||||||||||||||||||||||||||||||    
T  30483900 gtctcaccattctactaattccatctcaca 30483929  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 30503986 - 30504015
Alignment:
Q  90 gtctcaccattctactaattccatctcaca 119  Q
    ||||||||||||||||||||||||||||||    
T  30503986 gtctcaccattctactaattccatctcaca 30504015  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 30487649 - 30487713
Alignment:
Q  13 aatatggtgg-atttgttgtaattgggcattggccagacaactgtagagatggaatccacagatg 76  Q
    |||||||||| |||||||||||| |||||   ||| |||||| || |||||||||||||||||||    
T  30487649 aatatggtgggatttgttgtaatagggcagcagcccgacaaccgtggagatggaatccacagatg 30487713  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 17856469 - 17856367
Alignment:
Q  13 aatatggtggatttgttgtaattgggcattggccagacaactgtagagatggaatccacagatgttgagnnnnnnnngtctcaccattctactaattcca 112  Q
    |||||||| ||||||| |||||||||||  ||||||||||| |||||||||||||||||||||| ||||        |||||||||||||||||||||||    
T  17856469 aatatggtagatttgt-gtaattgggcagcggccagacaaccgtagagatggaatccacagatgctgag---tttttgtctcaccattctactaattcca 17856374  T
Q  113 tctcaca 119  Q
    |||||||    
T  17856373 tctcaca 17856367  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 10594641 - 10594693
Alignment:
Q  23 atttgttgtaattgggcattggccagacaactgtagagatggaatccacagat 75  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  10594641 atttgttgtaattgggcagcggccagacaaccgtagagatggaatccacagat 10594693  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 6175932 - 6175980
Alignment:
Q  25 ttgttgtaattgggcattggccagacaactgtagagatggaatccacag 73  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||    
T  6175932 ttgttgtaattgggcaatgggtagacaactgtagagatggaatccacag 6175980  T

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