View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5697-Insertion-2 (Length: 676)

Name: NF5697-Insertion-2
Description: NF5697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5697-Insertion-2
NF5697-Insertion-2
[»] chr3 (8 HSPs)
chr3 (12-676)||(10544194-10544863)
chr3 (171-321)||(37193286-37193436)
chr3 (176-242)||(19585643-19585709)
chr3 (170-242)||(12297676-12297748)
chr3 (185-231)||(44667453-44667499)
chr3 (176-232)||(18433130-18433186)
chr3 (10-98)||(31194202-31194290)
chr3 (10-98)||(52774023-52774111)
[»] chr6 (6 HSPs)
chr6 (171-321)||(34825006-34825156)
chr6 (171-321)||(33460849-33460999)
chr6 (170-232)||(21752792-21752854)
chr6 (170-232)||(33580680-33580742)
chr6 (192-222)||(6343502-6343532)
chr6 (176-225)||(26134600-26134649)
[»] chr8 (5 HSPs)
chr8 (171-348)||(2997712-2997889)
chr8 (481-613)||(20078060-20078192)
chr8 (174-237)||(20077753-20077816)
chr8 (176-239)||(25574806-25574869)
chr8 (185-237)||(18551539-18551591)
[»] scaffold0329 (1 HSPs)
scaffold0329 (176-242)||(12291-12357)
[»] chr1 (3 HSPs)
chr1 (176-242)||(52778962-52779028)
chr1 (174-237)||(14456838-14456901)
chr1 (175-223)||(9796045-9796093)
[»] chr5 (8 HSPs)
chr5 (173-242)||(17387965-17388034)
chr5 (132-225)||(9845911-9846004)
chr5 (182-240)||(15449982-15450040)
chr5 (192-222)||(16989791-16989821)
chr5 (188-225)||(23954103-23954140)
chr5 (10-98)||(19717706-19717794)
chr5 (176-232)||(31327667-31327723)
chr5 (176-232)||(31376334-31376390)
[»] chr4 (5 HSPs)
chr4 (173-242)||(22644641-22644710)
chr4 (182-223)||(14040099-14040140)
chr4 (181-223)||(8122137-8122179)
chr4 (181-219)||(19803306-19803344)
chr4 (10-98)||(13988973-13989061)
[»] chr2 (7 HSPs)
chr2 (176-239)||(18498778-18498841)
chr2 (176-239)||(26360449-26360512)
chr2 (173-242)||(29500650-29500719)
chr2 (192-222)||(20482626-20482656)
chr2 (192-222)||(28018531-28018561)
chr2 (176-232)||(30154844-30154900)
chr2 (180-228)||(37177582-37177630)
[»] scaffold0779 (1 HSPs)
scaffold0779 (516-615)||(5387-5486)
[»] scaffold1416 (1 HSPs)
scaffold1416 (192-222)||(199-229)
[»] chr7 (1 HSPs)
chr7 (176-225)||(16257678-16257727)
[»] scaffold0014 (1 HSPs)
scaffold0014 (10-98)||(94856-94944)


Alignment Details
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 12 - 676
Target Start/End: Original strand, 10544194 - 10544863
Alignment:
Q  12 taagatcaaatataaggctgatgggagcattgaaatatacaaagtcagattggttgcaaagggatataatcaagttgaaggtcttgannnnnnnn----- 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  10544194 taagatcaaatataaggctgatgggagcattgaaatatacaaagtcagattggttgcaaagggatataatcaagttgaaggtcttgattttttttttttt 10544293  T
Q  107 gacagtttttctcttgttgcaaagttaaccacaatcagaattctattggctcttgcatccacccaaaactggcatttacatcaattagatgtaaacaatg 206  Q
    | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  10544294 ggcagtttttctcctgttgcaaagttaaccacaatcagaattctattggctcttgcattcacccaaaactggcatttatatcaattagatgtaaacaatg 10544393  T
Q  207 ctttccttcatggagatttgcaagaaaatgtatataggagtatccctgatggtgttgatagtgctccaaacactgttagcaaattacagaagggtctcta 306  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10544394 ctttccttcatggagatttgcaagaaaatgtatacaagagtatccctgatagtgttgatagtgctccaaacactgttagcaaattacagaagagtctcta 10544493  T
Q  307 tggtttgaagcaagccggtcgcgagtggtatgagaaattgacttcactattacttagtgaaggatacacacagtcaaattctaattactccctcttcatc 406  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  10544494 tggtttgaagcaagccactcgcaagtggtatgagaaattgacttcactattacttagtgaagaatacacacagtcaaattctgattactccctcttcatc 10544593  T
Q  407 aatgcacatggttctgatttcacacctttgttggtgtatgttgatgacatcatcctggtaggctcttctcttcatgaatttgatagaatcaaatccattt 506  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10544594 aatgcacatggttctgatttcacaactttgttggtgtatgttgatgacatcatcctggcaggctcttctcttcatgaatttgatagaatcaaatccattt 10544693  T
Q  507 tagattccaaattcaagatcaaggatttaggagttctcaagtatttcttagggttggaaattgctcactctaatgcaggcattagtgtttcacaaaggaa 606  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10544694 tagattccaaattcaagatcaaggatttaggagttctcaaggatttcttagggttggaaattgctcactctaatgcaggcattagtgtttcacaaaggaa 10544793  T
Q  607 gtattgtctagaacttttagattcttctggcttattaggatctaaacctgctagcacacccttagatact 676  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10544794 gtattgtctagaccttttagattcttctggcttattaggatctaaacctgctagcacacccttagatact 10544863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 171 - 321
Target Start/End: Original strand, 37193286 - 37193436
Alignment:
Q  171 aaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatataggagtatccctgatggtgttgatagtgc 270  Q
    ||||||||||||||||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| || | || ||| || || |||||   ||||||    
T  37193286 aaaactggcatttacatcagttggatgtaaataatgcttttctacatggtgatttgcaagagaatgtttacatgaatataccagaaggtgtctctagtgc 37193385  T
Q  271 tccaaacactgttagcaaattacagaagggtctctatggtttgaagcaagc 321  Q
     |||||||  ||| |||||||||| ||| | || |||||||||||||||||    
T  37193386 accaaacaaggtttgcaaattacataagagcctatatggtttgaagcaagc 37193436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 19585709 - 19585643
Alignment:
Q  176 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 242  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| |||| ||||    
T  19585709 tggcatttacatcaacttgatgtaaacaatgctttccttcatggagatttacaagaagatgtttata 19585643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 12297676 - 12297748
Alignment:
Q  170 caaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 242  Q
    ||||| ||||||||||||||| | ||||||| ||||||||| |||||||||||||| |||||| |||| ||||    
T  12297676 caaaattggcatttacatcaacttgatgtaagcaatgcttttcttcatggagatttacaagaagatgtttata 12297748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 44667499 - 44667453
Alignment:
Q  185 catcaattagatgtaaacaatgctttccttcatggagatttgcaaga 231  Q
    |||||||||||||| || |||||||||||||||||||| ||||||||    
T  44667499 catcaattagatgttaaaaatgctttccttcatggagaattgcaaga 44667453  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 18433186 - 18433130
Alignment:
Q  176 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaa 232  Q
    |||||||||||||||||||||||||| ||||| ||  | |||||||| || ||||||    
T  18433186 tggcatttacatcaattagatgtaaataatgcgtttttgcatggagaattacaagaa 18433130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 31194290 - 31194202
Alignment:
Q  10 tataagatcaaatataaggctgatgggagcattgaaatatacaaagtcagattggttgcaaagggatataatcaagttgaaggtcttga 98  Q
    ||||| |||||| ||||||| ||||||||||| || |  ||||| | |||| |||| || || || |||||||||||||||||| ||||    
T  31194290 tataaaatcaaacataaggcagatgggagcatagagaggtacaaggccagactggtggctaaaggttataatcaagttgaaggtattga 31194202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 52774023 - 52774111
Alignment:
Q  10 tataagatcaaatataaggctgatgggagcattgaaatatacaaagtcagattggttgcaaagggatataatcaagttgaaggtcttga 98  Q
    ||||| |||||| ||||||| ||||||||||| || |  ||||| | |||| |||| || || || |||||||||||||||||| ||||    
T  52774023 tataaaatcaaacataaggcagatgggagcatagagaggtacaaggccagactggtggctaaaggttataatcaagttgaaggtattga 52774111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 171 - 321
Target Start/End: Original strand, 34825006 - 34825156
Alignment:
Q  171 aaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatataggagtatccctgatggtgttgatagtgc 270  Q
    ||||||||||||||||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| || | || ||| || || |||||   ||||||    
T  34825006 aaaactggcatttacatcagttggatgtaaataatgcttttctacatggtgatttgcaagagaatgtttacatgaatataccagaaggtgtctctagtgc 34825105  T
Q  271 tccaaacactgttagcaaattacagaagggtctctatggtttgaagcaagc 321  Q
     |||||||  ||| |||||||||| ||| | || |||||||||||||||||    
T  34825106 accaaacaaggtttgcaaattacataagagcctatatggtttgaagcaagc 34825156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 171 - 321
Target Start/End: Original strand, 33460849 - 33460999
Alignment:
Q  171 aaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatataggagtatccctgatggtgttgatagtgc 270  Q
    ||||||||||||||||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| || | || ||| || || |||||   ||||||    
T  33460849 aaaactggcatttacatcagttggatgtaaataatgcttttctacatggtgatttgcaagagaatgtttacatgaatataccagaaggtgtctctagtgc 33460948  T
Q  271 tccaaacactgttagcaaattacagaagggtctctatggtttgaagcaagc 321  Q
     |||||||  |||  ||| ||||| ||| | ||||||||||||||||||||    
T  33460949 accaaacaaggttttcaagttacataagagcctctatggtttgaagcaagc 33460999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 21752854 - 21752792
Alignment:
Q  170 caaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaa 232  Q
    |||||||||||||||||||||||||||||| ||||||| ||  | ||||| |||||| |||||    
T  21752854 caaaactggcatttacatcaattagatgtacacaatgcatttttgcatggtgatttggaagaa 21752792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 33580680 - 33580742
Alignment:
Q  170 caaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaa 232  Q
    |||||||||||||||||||||||||||||| ||||||| ||  | ||||| |||||| |||||    
T  33580680 caaaactggcatttacatcaattagatgtacacaatgcatttttgcatggtgatttggaagaa 33580742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 6343502 - 6343532
Alignment:
Q  192 tagatgtaaacaatgctttccttcatggaga 222  Q
    |||||||||||||||||||||||||||||||    
T  6343502 tagatgtaaacaatgctttccttcatggaga 6343532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 26134600 - 26134649
Alignment:
Q  176 tggcatttacatcaattagatgtaaacaatgctttccttcatggagattt 225  Q
    |||||| |||| ||||||||||| ||||||||||| || |||||||||||    
T  26134600 tggcatctacaccaattagatgtgaacaatgcttttctccatggagattt 26134649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 171 - 348
Target Start/End: Original strand, 2997712 - 2997889
Alignment:
Q  171 aaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatataggagtatccctgatggtgttgatagtgc 270  Q
    ||||||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||| ||||| || | || ||| || || ||| |   ||||||    
T  2997712 aaaactggcatttacatcagttggatgtaaacaatgcttttctacatggtgatttgcaagagaatgtttacatgaatataccagaaggtatctctagtgc 2997811  T
Q  271 tccaaacactgttagcaaattacagaagggtctctatggtttgaagcaagccggtcgcgagtggtatgagaaattgac 348  Q
     |||||||  ||| |||| ||||| ||| | || |||||||||||||||||| || |  | ||||||||||| |||||    
T  2997812 accaaacaaggtttgcaagttacataagagcctatatggtttgaagcaagccagtaggaaatggtatgagaagttgac 2997889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 481 - 613
Target Start/End: Original strand, 20078060 - 20078192
Alignment:
Q  481 tgaatttgatagaatcaaatccattttagattccaaattcaagatcaaggatttaggagttctcaagtatttcttagggttggaaattgctcactctaat 580  Q
    ||||||| | ||||||||||| ||| ||||| |  | |||||||| || ||||||||  ||||||| || |||||||| |||||| |||||||||||||     
T  20078060 tgaatttcaaagaatcaaatctattctagatgctcatttcaagattaaagatttaggcattctcaaatacttcttaggattggaagttgctcactctaaa 20078159  T
Q  581 gcaggcattagtgtttcacaaaggaagtattgt 613  Q
    | |||||||    |||| |||||||||||||||    
T  20078160 gaaggcatttcaatttcccaaaggaagtattgt 20078192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 20077753 - 20077816
Alignment:
Q  174 actggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgt 237  Q
    |||||||||||||||| ||||||||||||||||| || ||||||| ||||||||| ||| ||||    
T  20077753 actggcatttacatcagttagatgtaaacaatgcatttcttcatgaagatttgcaggaagatgt 20077816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 25574869 - 25574806
Alignment:
Q  176 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtat 239  Q
    ||||||||||||||| | ||||| || ||||| || ||||||||||||||||||||| ||||||    
T  25574869 tggcatttacatcaacttgatgtgaataatgcatttcttcatggagatttgcaagaagatgtat 25574806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 18551591 - 18551539
Alignment:
Q  185 catcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgt 237  Q
    |||||| | ||||| || ||||||||||||||||| || ||||||||||||||    
T  18551591 catcaacttgatgtcaataatgctttccttcatggtgaattgcaagaaaatgt 18551539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 12291 - 12357
Alignment:
Q  176 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 242  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||| |||| ||||    
T  12291 tggcatttacatcaacttgatgtaaacaatgcttttcttcatggagatttacaagaagatgtttata 12357  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 52778962 - 52779028
Alignment:
Q  176 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 242  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||| |||| ||||    
T  52778962 tggcatttacatcaacttgatgtaaacaatgcttttcttcatggagatttacaagaagatgtttata 52779028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 14456838 - 14456901
Alignment:
Q  174 actggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgt 237  Q
    ||||||||||||||||  | ||||||||||||||||| || ||||||||  |||||||| ||||    
T  14456838 actggcatttacatcagcttgatgtaaacaatgcttttctccatggagaactgcaagaagatgt 14456901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 9796093 - 9796045
Alignment:
Q  175 ctggcatttacatcaattagatgtaaacaatgctttccttcatggagat 223  Q
    |||| |||||||||||||||||||||| | ||||||| | |||||||||    
T  9796093 ctggaatttacatcaattagatgtaaatattgctttcttacatggagat 9796045  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 17387965 - 17388034
Alignment:
Q  173 aactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 242  Q
    |||||| |||||||||||||||||||||||||||| ||  | ||||||||| | |||||| |||||||||    
T  17387965 aactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatata 17388034  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 9846004 - 9845911
Alignment:
Q  132 taaccacaatcagaattctattggctcttgcatccacccaaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagattt 225  Q
    |||||||||||||| |  | |||||||| || |||| | | || |||||| ||||||||||||||||||| ||||| || || |||||||||||    
T  9846004 taaccacaatcagattaattttggctctagcttccatcaataattggcatctacatcaattagatgtaaataatgcctttctgcatggagattt 9845911  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 15449982 - 15450040
Alignment:
Q  182 ttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtata 240  Q
    ||||||||| | ||||| |||||||||||||||||||| ||| |||||||  |||||||    
T  15449982 ttacatcaacttgatgtgaacaatgctttccttcatggtgatctgcaagaggatgtata 15450040  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 16989821 - 16989791
Alignment:
Q  192 tagatgtaaacaatgctttccttcatggaga 222  Q
    |||||||||||||||||||||||||||||||    
T  16989821 tagatgtaaacaatgctttccttcatggaga 16989791  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 23954140 - 23954103
Alignment:
Q  188 caattagatgtaaacaatgctttccttcatggagattt 225  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  23954140 caattagatgttaacaatgctttccttcatggtgattt 23954103  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 19717794 - 19717706
Alignment:
Q  10 tataagatcaaatataaggctgatgggagcattgaaatatacaaagtcagattggttgcaaagggatataatcaagttgaaggtcttga 98  Q
    |||||||||||| |||| | |||||| || ||||||| |||||| |  ||| |||| |  ||||| |||||||||||||||||| ||||    
T  19717794 tataagatcaaacataaagttgatggtagtattgaaagatacaaggcaagactggtggttaagggttataatcaagttgaaggtattga 19717706  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 31327723 - 31327667
Alignment:
Q  176 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaa 232  Q
    |||||| | |||||| | |||||||||||||| || ||||||||||| |||||||||    
T  31327723 tggcatatgcatcaacttgatgtaaacaatgcatttcttcatggagaattgcaagaa 31327667  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 31376390 - 31376334
Alignment:
Q  176 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaa 232  Q
    |||||| | |||||| | |||||||||||||| || ||||||||||| |||||||||    
T  31376390 tggcatatgcatcaacttgatgtaaacaatgcatttcttcatggagaattgcaagaa 31376334  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 22644641 - 22644710
Alignment:
Q  173 aactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 242  Q
    ||||||||||||||||| |||||||| || ||||||||||| |||||||| || |||||| |||| ||||    
T  22644641 aactggcatttacatcagttagatgtcaataatgctttcctccatggagaattacaagaagatgtctata 22644710  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 14040099 - 14040140
Alignment:
Q  182 ttacatcaattagatgtaaacaatgctttccttcatggagat 223  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  14040099 ttacatcaattagatgtaaacaatgcatttcttcatggagat 14040140  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 8122179 - 8122137
Alignment:
Q  181 tttacatcaattagatgtaaacaatgctttccttcatggagat 223  Q
    |||||||||||| |||||||||||||| || ||||||||||||    
T  8122179 tttacatcaattggatgtaaacaatgcctttcttcatggagat 8122137  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 19803344 - 19803306
Alignment:
Q  181 tttacatcaattagatgtaaacaatgctttccttcatgg 219  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  19803344 tttacatcaattagatgtaaacaatgcctttcttcatgg 19803306  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 13988973 - 13989061
Alignment:
Q  10 tataagatcaaatataaggctgatgggagcattgaaatatacaaagtcagattggttgcaaagggatataatcaagttgaaggtcttga 98  Q
    ||||| |||||| ||||||| ||||||||||| || |  ||||| | |||| |||| || || || |||||||||||||||||| ||||    
T  13988973 tataaaatcaaacataaggcagatgggagcatagagaggtacaaggccagactggtggctaaaggctataatcaagttgaaggtattga 13989061  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 18498841 - 18498778
Alignment:
Q  176 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtat 239  Q
    ||||||||||||||| | ||||| || ||||| || ||||||||||||||||||||| ||||||    
T  18498841 tggcatttacatcaacttgatgtgaataatgcatttcttcatggagatttgcaagaagatgtat 18498778  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 26360512 - 26360449
Alignment:
Q  176 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtat 239  Q
    ||||||||||||||| | ||||| || ||||| || ||||||||||||||||||||| ||||||    
T  26360512 tggcatttacatcaacttgatgtgaataatgcatttcttcatggagatttgcaagaagatgtat 26360449  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 29500650 - 29500719
Alignment:
Q  173 aactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 242  Q
    |||||| ||||||||||| | ||||| |||||||||||||||||| ||||||| || ||| |||| ||||    
T  29500650 aactggaatttacatcaacttgatgttaacaatgctttccttcatagagatttacatgaagatgtttata 29500719  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 20482656 - 20482626
Alignment:
Q  192 tagatgtaaacaatgctttccttcatggaga 222  Q
    |||||||||||||||||||||||||||||||    
T  20482656 tagatgtaaacaatgctttccttcatggaga 20482626  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 28018531 - 28018561
Alignment:
Q  192 tagatgtaaacaatgctttccttcatggaga 222  Q
    |||||||||||||||||||||||||||||||    
T  28018531 tagatgtaaacaatgctttccttcatggaga 28018561  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 30154844 - 30154900
Alignment:
Q  176 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaa 232  Q
    |||||||||||||||||||||||||| ||||| ||  | |||||||| || ||||||    
T  30154844 tggcatttacatcaattagatgtaaataatgcgtttttgcatggagaattacaagaa 30154900  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 37177582 - 37177630
Alignment:
Q  180 atttacatcaattagatgtaaacaatgctttccttcatggagatttgca 228  Q
    ||||||||||| |||||||||| ||||| || || ||||||||||||||    
T  37177582 atttacatcaactagatgtaaataatgcctttctccatggagatttgca 37177630  T

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Target: scaffold0779 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 615
Target Start/End: Original strand, 5387 - 5486
Alignment:
Q  516 aattcaagatcaaggatttaggagttctcaagtatttcttagggttggaaattgctcactctaatgcaggcattagtgtttcacaaaggaagtattgtct 615  Q
    ||||||| || |||||||||||| | || || |||||||| || |||||| ||||||||||||| ||||| ||||  || || ||||| || ||||||||    
T  5387 aattcaaaattaaggatttaggaatccttaaatatttcttgggtttggaagttgctcactctaaagcaggaattacagtatcccaaagaaaatattgtct 5486  T

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Target: scaffold1416 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 229 - 199
Alignment:
Q  192 tagatgtaaacaatgctttccttcatggaga 222  Q
    |||||||||||||||||||||||||||||||    
T  229 tagatgtaaacaatgctttccttcatggaga 199  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 16257678 - 16257727
Alignment:
Q  176 tggcatttacatcaattagatgtaaacaatgctttccttcatggagattt 225  Q
    |||||| |||| ||||||||||| ||||||||||| || |||||||||||    
T  16257678 tggcatctacaccaattagatgtgaacaatgcttttctccatggagattt 16257727  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 94944 - 94856
Alignment:
Q  10 tataagatcaaatataaggctgatgggagcattgaaatatacaaagtcagattggttgcaaagggatataatcaagttgaaggtcttga 98  Q
    ||||| |||||| ||||||| ||||||||||| || |  ||||| | |||| |||| || || || |||||||||||||||||| ||||    
T  94944 tataaaatcaaacataaggcagatgggagcatagagaggtacaaggccagactggtggctaaaggctataatcaagttgaaggtattga 94856  T

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