View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5697-Insertion-3 (Length: 203)

Name: NF5697-Insertion-3
Description: NF5697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5697-Insertion-3
NF5697-Insertion-3
[»] chr7 (11 HSPs)
chr7 (8-203)||(4631382-4631577)
chr7 (8-203)||(4667396-4667585)
chr7 (72-134)||(4637378-4637440)
chr7 (72-134)||(4711584-4711646)
chr7 (72-134)||(4864446-4864508)
chr7 (70-147)||(4654004-4654081)
chr7 (72-136)||(4696702-4696766)
chr7 (73-136)||(4644214-4644277)
chr7 (78-147)||(4783353-4783422)
chr7 (78-147)||(4815782-4815851)
chr7 (70-134)||(4673224-4673288)
[»] chr4 (1 HSPs)
chr4 (19-134)||(18925204-18925319)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 4631577 - 4631382
Alignment:
Q  8 gaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631577 gaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaa 4631478  T
Q  108 tgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgcc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631477 tgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgcc 4631382  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 4667585 - 4667396
Alignment:
Q  8 gaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaa 107  Q
    ||||||||||||||||||||||||||||||  || || ||||||||| ||||||||| ||||||||||||||||||||||||||| || |     | |      
T  4667585 gaaccaaccttacccttctcaaagactttagcccttcactttggcttccaaacgataacaagacaatcaccaaagaatattgcatccataccaaacaagg 4667486  T
Q  108 tgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgcc 203  Q
     ||||| ||| || ||||||||||||||||      |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  4667485 ggagaaactagacgtaactttcattcccaa------aaacacaaaccaattaaatgcttttgctttcatcaacggaattgagattgtgtctatgcc 4667396  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 4637440 - 4637378
Alignment:
Q  72 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 134  Q
    |||||||||||||||||||||||||||    |||||||| ||| |||||||||||||||||||    
T  4637440 aatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcc 4637378  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 4711584 - 4711646
Alignment:
Q  72 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 134  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4711584 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 4711646  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 4864508 - 4864446
Alignment:
Q  72 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 134  Q
    ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||    
T  4864508 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 4864446  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 4654081 - 4654004
Alignment:
Q  70 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 147  Q
    ||||||||||||||||||||||| ||| |    || ||| |||||||||||||||||||||||||||| || ||||||    
T  4654081 acaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaac 4654004  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 4696702 - 4696766
Alignment:
Q  72 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 136  Q
    ||||||||||||||||||||| ||||     |||||||||||| |||||||||||||||||||||    
T  4696702 aatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattccca 4696766  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 4644277 - 4644214
Alignment:
Q  73 atcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 136  Q
    |||| |||||| |||||||| ||||||    |||||||||||||||||||||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccca 4644214  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 4783353 - 4783422
Alignment:
Q  78 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 147  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4783422  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 4815782 - 4815851
Alignment:
Q  78 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 147  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4815851  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 4673288 - 4673224
Alignment:
Q  70 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 134  Q
    |||||||||||||||| ||| || |||||    || ||||||||||||||||||| |||||||||    
T  4673288 acaatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc 4673224  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 18925204 - 18925319
Alignment:
Q  19 acccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaa 118  Q
    ||||||||||| |||||||| ||| | |||||||||  |||||||| |||||||||||| ||||| || ||| |  ||||    |||| ||||||| |||    
T  18925204 acccttctcaatgactttaaccccgcactttggcttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaactgagaagttaa 18925303  T
Q  119 acataactttcattcc 134  Q
    | ||||||||||||||    
T  18925304 atataactttcattcc 18925319  T

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