View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5697_high_1 (Length: 666)
Name: NF5697_high_1
Description: NF5697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5697_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 648
Target Start/End: Complemental strand, 34435827 - 34435190
Alignment:
| Q |
1 |
accagacacaagctgacacataactactaataataattttgaaaaaa--gacgtaattaaaggcaaccacatatgtcggatccggattgtaaataggttg |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34435827 |
accagacacaagctgacacataactactaataataattttgaaaaaatagacgtaattaaaggcaaccacatatgtcagatccggattgtaaataggttg |
34435728 |
T |
|
| Q |
99 |
tccaatcaagatcagacagtctacattacaagctaagtattttagatctnnnnnnnccaaaatcctctttaaaatctggactgttctatctttattgaca |
198 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| |
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| T |
34435727 |
tccaatcaagatcagacagtctagattacaagctaagtattttagatctaa-------aaaaacc-----aaaatctggactgttctatctttattgaca |
34435640 |
T |
|
| Q |
199 |
gctgatatgcctgtgcagtcacactgcacccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgttccatctgatgatg |
298 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34435639 |
gctgatatgcctgtgcaatcacactgcaaccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgttccatctgatgatg |
34435540 |
T |
|
| Q |
299 |
gtgatgtattaatacattttttggcactaacttatataatccatatgattttataattccagccctatcatgatgagtgctggagagctagaaagtggaa |
398 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34435539 |
gtgatgtattaatacattttttggcactaacttatataatccatatgattttataattccagccctatcatgatgagtgctggagagctagaaagtggaa |
34435440 |
T |
|
| Q |
399 |
atgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcagacataataagaaaagggaaaatgtgttgtctcttcataaacgatcttga |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34435439 |
atgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcagacataataagaaaagggaaaatgtgttgtctcttcataaacgatcttga |
34435340 |
T |
|
| Q |
499 |
tgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaaatgcaacacttatgaacattgctgataacccaacaaatgtt |
598 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34435339 |
tgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaaatgcaacacttatgaacattgctgataacccaacaaatgtt |
34435240 |
T |
|
| Q |
599 |
caacttcctggtatgtataacaaagaagagaatgcgcgtgtgcctatcat |
648 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34435239 |
caacttcctggtatgtataacaaagaagagaatgcacgtgtgcctatcat |
34435190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 8e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 358 - 648
Target Start/End: Complemental strand, 30666118 - 30665828
Alignment:
| Q |
358 |
cagccctatcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcagacataata |
457 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || |||| |||||| | ||||| | ||||| || |
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| T |
30666118 |
cagccccatcatgatgagtgctggagagcttgaaagtggaaatgcaggagagccagcaaaactgatcagacagagataccgtgaagccgctgacattatc |
30666019 |
T |
|
| Q |
458 |
agaaaagggaaaatgtgttgtctcttcataaacgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaa |
557 |
Q |
| |
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|| || || || ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||||| || ||||| || ||||| | |
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| T |
30666018 |
aggaagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaaccagatggtga |
30665919 |
T |
|
| Q |
558 |
atgcaacacttatgaacattgctgataacccaacaaatgttcaacttcctggtatgtataacaaagaagagaatgcgcgtgtgcctatcat |
648 |
Q |
| |
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|||| ||||| |||||||||||||||||||| || ||||| ||||| ||||||||||| ||||| ||||| || || |||||||| ||||| |
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| T |
30665918 |
atgccacactcatgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcat |
30665828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 359 - 648
Target Start/End: Complemental strand, 6853850 - 6853561
Alignment:
| Q |
359 |
agccctatcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcagacataataa |
458 |
Q |
| |
|
|||||||| ||||||||||| ||||| | |||||||||||||| ||||| || ||||| | ||| | ||||| ||| | || || || ||||| || | |
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| T |
6853850 |
agccctataatgatgagtgccggagaattggaaagtggaaatgcaggagagcctgcaaagttgattaggcaaaggtaccgtgaggcgtccgacattatca |
6853751 |
T |
|
| Q |
459 |
gaaaagggaaaatgtgttgtctcttcataaacgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaaa |
558 |
Q |
| |
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||||||| || ||||| ||||||||||| || ||||||||||||||||| ||| | |||||||| || || || |||||||| ||||| || |||||||| |
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| T |
6853750 |
gaaaaggaaagatgtgctgtctcttcatcaatgatcttgatgcaggagctggtagaatgggtggcactactcaatacacagtcaacaaccagatggtaaa |
6853651 |
T |
|
| Q |
559 |
tgcaacacttatgaacattgctgataacccaacaaatgttcaacttcctggtatgtataacaaagaagagaatgcgcgtgtgcctatcat |
648 |
Q |
| |
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|||||| || |||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||||||||||| || || |||||||| |
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| T |
6853650 |
tgcaaccctcatgaacattgctgacaaccctaccaatgttcaacttcccggtatgtacaacaaagaagagaatgcccgcgtccctatcat |
6853561 |
T |
|
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