View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5697_high_10 (Length: 234)
Name: NF5697_high_10
Description: NF5697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5697_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 10405945 - 10406156
Alignment:
| Q |
7 |
gaagatattatgcat--ggtgcatactgcatagtataacttgtgtaaggatccgtacagttgaacttggnnnnnnnnnnnnnnnnnnngatgttttctct |
104 |
Q |
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| T |
10405945 |
gaagatattatgcatatggtgcatactgcatagtataacttgtgtaaggatccgtacagttggacttggaaataaaataaaataaaaagatgttttctct |
10406044 |
T |
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| Q |
105 |
gtggaaaaagtatggaagaatcaaagataagatcctatcatcctaataatcgtgattgctgtgagtgtgggtaccttgatgattgatgagaggtgggggt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10406045 |
gtggaaaaagtatggaagaatcaaagataagatcctatcatcctaataatcgtgattgctgtgagtgtgggtaccttgatgattgatgagaggt--gggt |
10406142 |
T |
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| Q |
205 |
accttgaaaatatc |
218 |
Q |
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|||||||||||||| |
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| T |
10406143 |
accttgaaaatatc |
10406156 |
T |
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