View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5697_high_4 (Length: 411)
Name: NF5697_high_4
Description: NF5697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5697_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 30 - 403
Target Start/End: Complemental strand, 38090224 - 38089848
Alignment:
| Q |
30 |
agaattgaaccagttgagatggttgagtgttcaatgatgatgttggttgatcttgaaatatcaattccatcggtgttgggactattctccggtgcaatta |
129 |
Q |
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| T |
38090224 |
agaattgaaccagttgagatggttgagtgttcaatgatgatgttggttgatcttgaaatatcaattccatcggtgttgggactattctccggtgcaatta |
38090125 |
T |
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| Q |
130 |
tatgaagatgggagattaaagcgccgttgcaatcaactatgcttatatgatttttcgggctgtcaatgtgtctcaatggaccaagttttagattatcaca |
229 |
Q |
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| T |
38090124 |
tatgaagatgggagattaaagcgccattgcaatcgactatgcttatatgattttttgggctgtcaatgtgtctcaatggaccaagttttagattatcaca |
38090025 |
T |
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| Q |
230 |
accaagaaattgaagagcctgcacataaacatgttatattaaatttatacactttaattccaaaactcaggagt--gtgtttgtgtaaattatttgccat |
327 |
Q |
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| T |
38090024 |
tccaagaaattgaagagcctgcagataaacatgttatattaaatttatacactttaattccaaaactcaggagtgtgtgtttgtgta---catttgccat |
38089928 |
T |
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| Q |
328 |
aactatatgttagcattttagttttcatttaaga----catggaattaacttacagttggcctgccatggtcagtataat |
403 |
Q |
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| T |
38089927 |
aactatatgttagcattttagttttcatttaagacatgcatggaattaacttacagttggcctgccatggtcattataat |
38089848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 68 - 267
Target Start/End: Complemental strand, 32730302 - 32730103
Alignment:
| Q |
68 |
gatgttggttgatcttgaaatatcaattccatcggtgttgggactattctccggtgcaattatatgaagatgggagattaaagcgccgttgcaatcaact |
167 |
Q |
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| T |
32730302 |
gatgttggttgatgttgaaatgtcaatcccatcggtgttgggactatcctttggagcaattatatgaagattagagattaaagcgtcattgcatccgact |
32730203 |
T |
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| Q |
168 |
atgcttatatgatttttcgggctgtcaatgtgtctcaatggaccaagttttagattatcacaaccaagaaattgaagagcctgcacataaacatgttata |
267 |
Q |
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| T |
32730202 |
atacttatatgatttctggggctgttgatgtgtttcaatgggccaagttttagattatcacattcaagaattttaagagcctgcatatatatatgttata |
32730103 |
T |
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